Carubv10006654m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10006654m.g T257747_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006654m MADS box 7 53

Links

Other MADS box family TFs
Other Capsella rubella TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene18433-v1.0-hybrid Fragaria vesca gene18433-v1.0-hybrid N 0.000
cassava15723.m1 Manihot esculenta cassava15723.m1 N 0.000
cassava2361.valid.m1 Manihot esculenta cassava2361.valid.m1 N 0.000
cassava31335.valid.m1 Manihot esculenta cassava31335.valid.m1 N 0.000
Cucsa.175500 Cucumis sativus Cucsa.175500 N 0.000
mgf014897m Mimulus guttatus mgf014897m N 0.000
Aquca_009_00954 Aquilegia coerulea Aquca_009_00954 N 0.000
Ciclev10011141m.g Citrus clementina Ciclev10011141m.g N 0.000
Ciclev10030787m.g Citrus clementina Ciclev10030787m.g N 0.000
Eucgr.A01279 Eucalyptus grandis Eucgr.A01279 N 0.000
29767.m000200 Ricinus communis 29767.m000200 N 0.000
Gorai.007G376400 Gossypium raimondii Gorai.007G376400 N 0.000
Gorai.011G266200 Gossypium raimondii Gorai.011G266200 N 0.000
Lus10024384.g Linum usitatissimum Lus10024384.g N 0.000
orange1.1g004488m.g Citrus sinensis orange1.1g004488m.g N 0.000
orange1.1g004514m.g Citrus sinensis orange1.1g004514m.g N 0.000
SapurV1A.0001s1700 Salix purpurea SapurV1A.0001s1700 N 0.000
PK20526.1 Cannabis sativa PK20526.1 N 0.000
PDK_20s1329542g002 Phoenix dactylifera PDK_20s1329542g002 N 0.000
Solyc10g086530.1 Solanum lycopersicum Solyc10g086530.1 N 0.000
GLYMA07G15950 Glycine max GLYMA07G15950 N 0.000
GLYMA18G39920 Glycine max GLYMA18G39920 N 0.000
MTR_7g062120 Medicago truncatula MTR_7g062120 N 0.000
PGSC0003DMG400008904 Solanum tuberosum PGSC0003DMG400008904 N 0.000
PGSC0003DMG400019200 Solanum tuberosum PGSC0003DMG400019200 N 0.000
POPTR_0006s08690 Populus trichocarpa POPTR_0006s08690 N 0.000
PRUPE_ppa001883mg Prunus persica PRUPE_ppa001883mg N 0.000
Si034417m.g Setaria italica Si034417m.g N 0.000
Solyc09g010920.1 Solanum lycopersicum Solyc09g010920.1 N 0.000
GLYMA03G10320 Glycine max GLYMA03G10320 N 0.000
TCM_021920 Theobroma cacao TCM_021920 N 0.000
TCM_042705 Theobroma cacao TCM_042705 N 0.000
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N 0.000
VIT_08s0007g00510 Vitis vinifera VIT_08s0007g00510 N 0.000
Ca_21138 Cicer arietinum Ca_21138 N 0.000
Cla018179 Citrullus lanatus Cla018179 N 0.000
Pm002685 Prunus mume Pm002685 N 0.000
27568.m000253 Ricinus communis 27568.m000253 N 0.000