Ogr09995 (Ophisaurus gracilis)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Ogr09995 T261293_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Mecp2
M00806_2.00 		Mus musculus
NNNNNHAHNN
NNDTDNNNNN		 PBM
Weirauch et al.(2013)
pTH3054 		1.000 1.000
MECP2
M09257_2.00 		Homo sapiens
SCCGGRR
YYCCGGS		 Misc
Kulakovskiy et al.(2013)
MECP2_HUMAN.H11MO.0.C 		1.000 1.000
Mecp2
M09259_2.00 		Mus musculus
SCCGGRR
YYCCGGS		 Misc
Kulakovskiy et al.(2013)
MECP2_MOUSE.H11MO.0.C 		1.000 1.000
MECP2
M11032_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MECP2_01 		1.000 1.000
MECP2
M11033_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MECP2_02 		1.000 1.000
MECP2
M11034_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MECP2_Q4_01 		1.000 1.000
MECP2
M11035_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MECP2_Q4 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr09995 MBD 188 259

Links

Other MBD family TFs
Other Ophisaurus gracilis TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.000
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I 0.000
OS01G0672201 Oryza sativa OS01G0672201 I 0.000
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.000
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.000
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.000
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.000
TCM_008214 Theobroma cacao TCM_008214 I 0.000
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.000
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.000
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.000
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.000
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.000
Pm012761 Prunus mume Pm012761 N 0.000
LjSGA_012738.1 Lotus japonicus LjSGA_012738.1 N 0.000
cassava31027.valid.m1 Manihot esculenta cassava31027.valid.m1 N 0.000
gene14635-v1.0-hybrid Fragaria vesca gene14635-v1.0-hybrid N 0.000
scaffold_603934.1 Arabidopsis lyrata scaffold_603934.1 N 0.000
POPTR_0004s04840 Populus trichocarpa POPTR_0004s04840 N 0.000
ORUFI05G12600 Oryza rufipogon ORUFI05G12600 N 0.000
ONIVA05G12010 Oryza nivara ONIVA05G12010 N 0.000
OLONG_014924 Oryza longistaminata OLONG_014924 N 0.000
OBART05G11630 Oryza barthii OBART05G11630 N 0.000
OB01G35260 Oryza brachyantha OB01G35260 N 0.000
GSMUA_Achr9G06610_001 Musa acuminata GSMUA_Achr9G06610_001 N 0.000
GSMUA_Achr8G27210_001 Musa acuminata GSMUA_Achr8G27210_001 N 0.000
GLYMA08G38930 Glycine max GLYMA08G38930 N 0.000
Bo9g006410 Brassica oleracea Bo9g006410 N 0.000
BGIOSGA019617 Oryza indica BGIOSGA019617 N 0.000