CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bostr.10064s0009 *(Boechera stricta)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Bostr.10064s0009	T285671_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RVE5 M01079_2.00	Arabidopsis thaliana	NWAATATCHN	NDGATATTWN	PBM Sullivan et al.(2014) pTH7138	0.875	0.978
RVE5 M07100_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At4g01280_col_a	0.875	0.978
RVE5 M07101_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At4g01280_colamp_a	0.875	0.978
PK02532.1 M02347_2.00	Cannabis sativa	WAATATCTN	NAGATATTW	PBM Weirauch et al.(2014) pTH9579	0.837	0.913
RVE8 M01074_2.00	Arabidopsis thaliana	NNNRWATCNN	NNGATWYNNN	PBM Sullivan et al.(2014) pTH7136	0.829	0.891
RVE8 M07069_2.00	Arabidopsis thaliana	NHNWAAATATCT	AGATATTTWNDN	Dap-seq OMalley et al.(2016) At3g09600_col_a	0.829	0.891
RVE8 M07070_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At3g09600_colamp_a	0.829	0.891
RVE4 M07117_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LCL1_colamp_a	0.829	0.891
RVE4 M07118_2.00	Arabidopsis thaliana	NAAAATATCT	AGATATTTTN	Dap-seq OMalley et al.(2016) LCL1_col	0.829	0.891
RVE6 M01081_2.00	Arabidopsis thaliana	AATATCTD	HAGATATT	PBM Sullivan et al.(2014) pTH7151	0.827	0.891
RVE6 M07138_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At5g52660_col_a	0.827	0.891
RVE6 M07139_2.00	Arabidopsis thaliana	NNNWAAATATCT	AGATATTTWNNN	Dap-seq OMalley et al.(2016) At5g52660_colamp_a	0.827	0.891
mybG M02319_2.00	Dictyostelium discoideum	WAATATCT	AGATATTW	PBM Weirauch et al.(2014) pTH5362	0.808	0.870
PK08316.1 M02350_2.00	Cannabis sativa	NNNRWATCNN	NNGATWYNNN	PBM Weirauch et al.(2014) pTH9488	0.747	0.717
RVE1 M00879_2.00	Arabidopsis thaliana	AAATATCT	AGATATTT	PBM Franco-Zorrilla et al.(2014) RVE1	0.711	0.674
RVE1 M07128_2.00	Arabidopsis thaliana	NNNWAAATATCTNN	NNAGATATTTWNNN	Dap-seq OMalley et al.(2016) RVE1_col_a	0.711	0.674
RVE1 M07129_2.00	Arabidopsis thaliana	NNWAATATCW	WGATATTWNN	Dap-seq OMalley et al.(2016) RVE1_colamp_a	0.711	0.674
OS08G0157600 M02330_2.00	Oryza sativa	DNRTATCHN	NDGATAYNH	PBM Weirauch et al.(2014) pTH7793	0.691	0.674
LHY M06997_2.00	Arabidopsis thaliana	NWAAATATCT	AGATATTTWN	Dap-seq OMalley et al.(2016) LHY1_col_a	0.681	0.652
LHY M06998_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LHY1_colamp_a	0.681	0.652
RVE7 M01069_2.00	Arabidopsis thaliana	NDHRWATCNN	NNGATWYDHN	PBM Sullivan et al.(2014) pTH7081	0.668	0.609
RVE7 M02286_2.00	Arabidopsis thaliana	NDARTATCH	DGATAYTHN	PBM Weirauch et al.(2014) pTH7277	0.668	0.609
RVE7L M07071_2.00	Arabidopsis thaliana	NNNNWAAATATCWNN	NNWGATATTTWNNNN	Dap-seq OMalley et al.(2016) AT3G10113_col_a	0.668	0.609
RVE7 M07008_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) EPR1_colamp_a	0.668	0.609
RVE7 M07009_2.00	Arabidopsis thaliana	NWAAATATCTHN	NDAGATATTTWN	Dap-seq OMalley et al.(2016) EPR1_col	0.668	0.609
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bostr.10064s0009.1.p	Myb	60	105	RENWTEQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIRSHAQKYF

Links
Other Myb/SANT family TFs
Other *Boechera stricta* TFs

430 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aquca_009_00954	Aquilegia coerulea	Aquca_009_00954	N	0.000
PRUPE_ppa001883mg	Prunus persica	PRUPE_ppa001883mg	N	0.000
Sb01g039670	Sorghum bicolor	Sb01g039670	N	0.000
Si034417m.g	Setaria italica	Si034417m.g	N	0.000
TCM_021920	Theobroma cacao	TCM_021920	N	0.000
Traes_5BL_C8BEC527F	Triticum aestivum	Traes_5BL_C8BEC527F	N	0.000
Traes_5DL_8FD0CF6B9	Triticum aestivum	Traes_5DL_8FD0CF6B9	N	0.000
VIT_08s0007g00510	Vitis vinifera	VIT_08s0007g00510	N	0.000
Pm002685	Prunus mume	Pm002685	N	0.000
POPTR_0006s08690	Populus trichocarpa	POPTR_0006s08690	N	0.000
Ciclev10011141m.g	Citrus clementina	Ciclev10011141m.g	N	0.000
Ciclev10030787m.g	Citrus clementina	Ciclev10030787m.g	N	0.000
gene18433-v1.0-hybrid	Fragaria vesca	gene18433-v1.0-hybrid	N	0.000
orange1.1g004488m.g	Citrus sinensis	orange1.1g004488m.g	N	0.000
orange1.1g004514m.g	Citrus sinensis	orange1.1g004514m.g	N	0.000
Pavir.Ia03770	Panicum virgatum	Pavir.Ia03770	N	0.000
Pavir.J32327	Panicum virgatum	Pavir.J32327	N	0.000
OLONG_013585	Oryza longistaminata	OLONG_013585	N	0.000
BRADI4G43680	Brachypodium distachyon	BRADI4G43680	N	0.000
F775_08186	Aegilops tauschii	F775_08186	N	0.000
GRMZM2G049159	Zea mays	GRMZM2G049159	N	0.000
GRMZM2G098784	Zea mays	GRMZM2G098784	N	0.000
MLOC_73193	Hordeum vulgare	MLOC_73193	N	0.000
OB03G37330	Oryza brachyantha	OB03G37330	N	0.000
OBART03G30260	Oryza barthii	OBART03G30260	N	0.000
OGLUM03G30480	Oryza glumaepatula	OGLUM03G30480	N	0.000
BGIOSGA010017	Oryza indica	BGIOSGA010017	N	0.000
OMERI03G26460	Oryza meridionalis	OMERI03G26460	N	0.000
ONIVA03G31510	Oryza nivara	ONIVA03G31510	N	0.000
OPUNC03G27510	Oryza punctata	OPUNC03G27510	N	0.000
ORGLA03G0287000	Oryza glaberrima	ORGLA03G0287000	N	0.000
ORUFI03G31480	Oryza rufipogon	ORUFI03G31480	N	0.000
OS03G0690600	Oryza sativa	OS03G0690600	N	0.000
PGSC0003DMG400019200	Solanum tuberosum	PGSC0003DMG400019200	N	0.000

Bostr.10064s0009 (Boechera stricta) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

430 Related TFs

Bostr.10064s0009 **(Boechera stricta)
Myb/SANT**