CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.1365s0066
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.1365s0066
T286032_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SRM1
M02307_2.00
Arabidopsis thaliana
NNHNATCNN
NNGATNDNN
PBM
Weirauch et al.(2014)
pTH7080
0.853
0.967
SRM1
M07121_2.00
Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a
0.853
0.967
SRM1
M07122_2.00
Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_col_b
0.853
0.967
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.1365s0066.1.p
Myb
119
164
AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SRM1
Arabidopsis thaliana
AT5G08520
D
0.853
Eucgr.G02591
Eucalyptus grandis
Eucgr.G02591
I
0.731
cassava18614.valid.m1
Manihot esculenta
cassava18614.valid.m1
I
0.724
Cucsa.013870
Cucumis sativus
Cucsa.013870
I
0.743
Cucsa.280970
Cucumis sativus
Cucsa.280970
I
0.703
mgf009460m
Mimulus guttatus
mgf009460m
I
0.661
Aquca_035_00057
Aquilegia coerulea
Aquca_035_00057
I
0.708
Bostr.10199s0068
Boechera stricta
Bostr.10199s0068
I
0.739
Bostr.13129s0103
Boechera stricta
Bostr.13129s0103
I
0.840
Cagra.25796s0001
Capsella grandiflora
Cagra.25796s0001
I
0.666
Carubv10001525m.g
Capsella rubella
Carubv10001525m.g
I
0.909
Carubv10003231m.g
Capsella rubella
Carubv10003231m.g
I
0.668
Ciclev10032259m.g
Citrus clementina
Ciclev10032259m.g
I
0.748
Pm006046
Prunus mume
Pm006046
I
0.690
evm.TU.supercontig_138.5
Carica papaya
evm.TU.supercontig_138.5
I
0.708
Gorai.005G212900
Gossypium raimondii
Gorai.005G212900
I
0.735
Gorai.008G147400
Gossypium raimondii
Gorai.008G147400
I
0.724
Gorai.012G135600
Gossypium raimondii
Gorai.012G135600
I
0.756
Gorai.013G067600
Gossypium raimondii
Gorai.013G067600
I
0.735
Lus10013447.g
Linum usitatissimum
Lus10013447.g
I
0.661
orange1.1g022439m.g
Citrus sinensis
orange1.1g022439m.g
I
0.748
SapurV1A.0234s0050
Salix purpurea
SapurV1A.0234s0050
I
0.734
SapurV1A.0333s0040
Salix purpurea
SapurV1A.0333s0040
I
0.681
Thhalv10005383m.g
Eutrema salsugineum
Thhalv10005383m.g
I
0.705
Thhalv10014203m.g
Eutrema salsugineum
Thhalv10014203m.g
I
0.868
PK13672.1
Cannabis sativa
PK13672.1
I
0.691
GRMZM2G149958
Zea mays
GRMZM2G149958
I
0.661
Bo2g009130
Brassica oleracea
Bo2g009130
I
0.837
Bo3g004970
Brassica oleracea
Bo3g004970
I
0.837
Bo7g097510
Brassica oleracea
Bo7g097510
I
0.664
Bo9g174380
Brassica oleracea
Bo9g174380
I
0.820
Bra009346
Brassica rapa
Bra009346
I
0.800
Bra009699
Brassica rapa
Bra009699
I
0.664
Bra028654
Brassica rapa
Bra028654
I
0.811
fgenesh2_kg.6__825__AT5G08520.1
Arabidopsis lyrata
fgenesh2_kg.6__825__AT5G08520.1
I
0.848
GLYMA07G28310
Glycine max
GLYMA07G28310
I
0.729
GLYMA08G40020
Glycine max
GLYMA08G40020
I
0.717
GLYMA18G18140
Glycine max
GLYMA18G18140
I
0.717
GLYMA20G01450
Glycine max
GLYMA20G01450
I
0.734
30131.m007263
Ricinus communis
30131.m007263
I
0.734
GSMUA_Achr1G17730_001
Musa acuminata
GSMUA_Achr1G17730_001
I
0.724
GSMUA_Achr9G20620_001
Musa acuminata
GSMUA_Achr9G20620_001
I
0.718
GSMUA_Achr9G23760_001
Musa acuminata
GSMUA_Achr9G23760_001
I
0.699
PGSC0003DMG400025303
Solanum tuberosum
PGSC0003DMG400025303
I
0.669
PRUPE_ppa009396mg
Prunus persica
PRUPE_ppa009396mg
I
0.728
TCM_007672
Theobroma cacao
TCM_007672
I
0.724
VIT_10s0071g00660
Vitis vinifera
VIT_10s0071g00660
I
0.713
Ca_19000
Cicer arietinum
Ca_19000
I
0.677
Cla009230
Citrullus lanatus
Cla009230
I
0.743
Cla020348
Citrullus lanatus
Cla020348
I
0.716
Sb06g032880
Sorghum bicolor
Sb06g032880
N
0.669