Carubv10026823m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10026823m.g T286453_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026823m Myb 157 202
Carubv10026823m Myb 249 298

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0053s0440 Salix purpurea SapurV1A.0053s0440 N
Ciclev10022348m.g Citrus clementina Ciclev10022348m.g N
Eucgr.H01546 Eucalyptus grandis Eucgr.H01546 N
evm.TU.supercontig_9.132 Carica papaya evm.TU.supercontig_9.132 N
gene27736-v1.0-hybrid Fragaria vesca gene27736-v1.0-hybrid N
Lus10008176.g Linum usitatissimum Lus10008176.g N
Lus10027980.g Linum usitatissimum Lus10027980.g N
Lus10029631.g Linum usitatissimum Lus10029631.g N
Lus10042674.g Linum usitatissimum Lus10042674.g N
orange1.1g029175m.g Citrus sinensis orange1.1g029175m.g N
Carubv10018085m.g Capsella rubella Carubv10018085m.g N
SapurV1A.0135s0370 Salix purpurea SapurV1A.0135s0370 N
SapurV1A.0633s0290 Salix purpurea SapurV1A.0633s0290 N
SapurV1A.0633s0300 Salix purpurea SapurV1A.0633s0300 N
Thhalv10001805m.g Eutrema salsugineum Thhalv10001805m.g N
Thhalv10006277m.g Eutrema salsugineum Thhalv10006277m.g N
PK28604.1 Cannabis sativa PK28604.1 N
chr5.CM0909.10.nc Lotus japonicus chr5.CM0909.10.nc N
LjSGA_013286.1 Lotus japonicus LjSGA_013286.1 N
POPTR_0014s13300 Populus trichocarpa POPTR_0014s13300 N
MBD1 Arabidopsis thaliana AT4G22745 N
Bo4g098290 Brassica oleracea Bo4g098290 N
Bo8g098350 Brassica oleracea Bo8g098350 N
Bra007723 Brassica rapa Bra007723 N
Bra040421 Brassica rapa Bra040421 N
GLYMA02G16930 Glycine max GLYMA02G16930 N
GLYMA10G02860 Glycine max GLYMA10G02860 N
POPTR_0002s22900 Populus trichocarpa POPTR_0002s22900 N
MBD4 Arabidopsis thaliana AT3G63030 N
MBD4 Arabidopsis lyrata scaffold_503585.1 N
MBD1 Arabidopsis lyrata scaffold_702078.1 N
Pm019897 Prunus mume Pm019897 N
cassava29544.valid.m1 Manihot esculenta cassava29544.valid.m1 N
cassava29545.valid.m1 Manihot esculenta cassava29545.valid.m1 N
Bostr.13158s0305 Boechera stricta Bostr.13158s0305 N
Bostr.7867s0060 Boechera stricta Bostr.7867s0060 N
Cagra.0664s0040 Capsella grandiflora Cagra.0664s0040 N