Lus10035093.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10035093.g T288164_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G40260
M07057_2.00 		Arabidopsis thaliana
HHWDWAHATTCYHTN
NADRGAATDTWHWDD		 Dap-seq
OMalley et al.(2016)
AT2G40260_col_a 		0.771 0.787
AT2G40260
M07058_2.00 		Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT
ADRGAATDTWHHNDDWHHNN		 Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a 		0.771 0.787
PK26523.1
M01283_2.00 		Cannabis sativa
NWHATTCYNN
NNRGAATDWN		 PBM
Lambert et al.(2019)
pTH11304 		0.771 0.766
AT2G38300
M07056_2.00 		Arabidopsis thaliana
WAHATTCYHTH
DADRGAATDTW		 Dap-seq
OMalley et al.(2016)
AT2G38300_col_a 		0.743 0.723
AT1G14600
M01268_2.00 		Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN		 PBM
Lambert et al.(2019)
pTH11557 		0.703 0.766
PHR1
M02329_2.00 		Oryza sativa
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7755 		0.695 0.745
PHL6
M02295_2.00 		Arabidopsis thaliana
NNWKATNCBN
NVGNATMWNN		 PBM
Weirauch et al.(2014)
pTH7071 		0.685 0.702
PHL6
M07083_2.00 		Arabidopsis thaliana
NDGAAAACH
DGTTTTCHN		 Dap-seq
OMalley et al.(2016)
At3g13040_col_b 		0.685 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10035093 Myb 37 88

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

403 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I
BXY_1081900 Bursaphelenchus xylophilus BXY_1081900 I
BXY_1081800 Bursaphelenchus xylophilus BXY_1081800 I
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I
mgf012563m Mimulus guttatus mgf012563m I
Si007288m.g Setaria italica Si007288m.g I
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I
GRMZM5G834758 Zea mays GRMZM5G834758 I
GLYMA16G22060 Glycine max GLYMA16G22060 I
GLYMA03G08270 Glycine max GLYMA03G08270 I
GLYMA01G28820 Glycine max GLYMA01G28820 I
ENSCING00000000505 Ciona intestinalis ENSCING00000000505 I
nAv.1.0.1.g08227 Acanthocheilonema viteae nAv.1.0.1.g08227 N
CBG20663 Caenorhabditis briggsae CBG20663 N
Bm8632 Brugia malayi Bm8632 N
GPUH_0002275001 Gongylonema pulchrum GPUH_0002275001 N
L596_g16476 Steinernema carpocapsae L596_g16476 N
L889_g13720 Steinernema feltiae L889_g13720 N
L889_g16198 Steinernema feltiae L889_g16198 N
L892_g23618 Steinernema scapterisci L892_g23618 N
L893_g23503 Steinernema glaseri L893_g23503 N
L898_g7743 Steinernema monticolum L898_g7743 N
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N
ACOC_0001190001 Angiostrongylus costaricensis ACOC_0001190001 N
nDi.2.2.2.g08508 Dirofilaria immitis nDi.2.2.2.g08508 N
nLs.2.1.2.g04082 Litomosoides sigmodontis nLs.2.1.2.g04082 N
nOo.2.0.1.g04693 Onchocerca ochengi nOo.2.0.1.g04693 N
OESDEN_18796 Oesophagostomum dentatum OESDEN_18796 N
scaffold593-EXSNAP2012.5 Pristionchus exspectatus scaffold593-EXSNAP2012.5 N
SVUK_0001721701 Strongylus vulgaris SVUK_0001721701 N
TCLT_0000071201 Thelazia callipaeda TCLT_0000071201 N
TCNE_0000520101 Toxocara canis TCNE_0000520101 N
CJA04355 Caenorhabditis japonica CJA04355 N
PPA12247 Pristionchus pacificus PPA12247 N
MTR_8g018100 Medicago truncatula MTR_8g018100 N
Traes_1DL_ED7FDC748 Triticum aestivum Traes_1DL_ED7FDC748 N
WBGene00238628 Onchocerca volvulus WBGene00238628 N
Hsal_03836--NA Harpegnathos saltator Hsal_03836--NA N
fgenesh2_pg.scaffold_4000274 Monosiga brevicollis fgenesh2_pg.scaffold_4000274 N
LOAG_08062 Loa loa LOAG_08062 N
Sakowv30021656m.g Saccoglossus kowalevskii Sakowv30021656m.g N
ENSMEUG00000004078 Macropus eugenii ENSMEUG00000004078 N
BTMF_0000420901 Brugia timori BTMF_0000420901 N
SapurV1A.0491s0160 Salix purpurea SapurV1A.0491s0160 N
CBN04053 Caenorhabditis brenneri CBN04053 N
Minc03634 Meloidogyne incognita Minc03634 N
Minc04648 Meloidogyne incognita Minc04648 N
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N
ASIS014204 Anopheles sinensis ASIS014204 N
ACAC_0000798501 Angiostrongylus cantonensis ACAC_0000798501 N
ALUE_0001190701 Ascaris lumbricoides ALUE_0001190701 N
ANCDUO_24269 Ancylostoma duodenale ANCDUO_24269 N