POPTR_0001s13380 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0001s13380 T295204_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC083
M02374_2.00 		Arabidopsis thaliana
WYACGYAANN
NNTTRCGTRW		 PBM
Weirauch et al.(2014)
pTH7308 		0.934 0.868
NAC083
M07230_2.00 		Arabidopsis thaliana
TRCKTRWNNNDYAMG
CKTRHNNNWYAMGYA		 Dap-seq
OMalley et al.(2016)
ANAC083_colamp_a 		0.934 0.868
NAC083
M07231_2.00 		Arabidopsis thaliana
TTNCKTRWNNHDYACGYWA
TWRCGTRHDNNWYAMGNAA		 Dap-seq
OMalley et al.(2016)
ANAC083_col_v3a 		0.934 0.868
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s13380.1 NAC/NAM 15 138

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC083 Arabidopsis thaliana AT5G13180 D 0.934
30128.m009035 Ricinus communis 30128.m009035 I 0.951
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I 0.940
cassava1138.valid.m1 Manihot esculenta cassava1138.valid.m1 I 0.952
cassava12891.valid.m1 Manihot esculenta cassava12891.valid.m1 I 0.950
Cucsa.349370 Cucumis sativus Cucsa.349370 I 0.958
Aquca_011_00050 Aquilegia coerulea Aquca_011_00050 I 0.918
Aquca_021_00051 Aquilegia coerulea Aquca_021_00051 I 0.947
Bostr.23794s0753 Boechera stricta Bostr.23794s0753 I 0.909
Bostr.2902s0053 Boechera stricta Bostr.2902s0053 I 0.929
Cagra.0596s0010 Capsella grandiflora Cagra.0596s0010 I 0.929
Carubv10002548m.g Capsella rubella Carubv10002548m.g I 0.928
Ciclev10032547m.g Citrus clementina Ciclev10032547m.g I 0.953
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I 0.944
Eucgr.H03387 Eucalyptus grandis Eucgr.H03387 I 0.935
evm.TU.supercontig_99.63 Carica papaya evm.TU.supercontig_99.63 I 0.925
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I 0.944
Gorai.012G125500 Gossypium raimondii Gorai.012G125500 I 0.949
Lus10001809.g Linum usitatissimum Lus10001809.g I 0.926
Lus10002581.g Linum usitatissimum Lus10002581.g I 0.924
MDP0000126517 Malus domestica MDP0000126517 I 0.949
MDP0000130123 Malus domestica MDP0000130123 I 0.949
MDP0000147080 Malus domestica MDP0000147080 I 0.894
orange1.1g030727m.g Citrus sinensis orange1.1g030727m.g I 0.953
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I 0.959
SapurV1A.0453s0210 Salix purpurea SapurV1A.0453s0210 I 0.953
Thhalv10014495m.g Eutrema salsugineum Thhalv10014495m.g I 0.905
Thhalv10017152m.g Eutrema salsugineum Thhalv10017152m.g I 0.914
PK12461.1 Cannabis sativa PK12461.1 I 0.940
NAC041 Arabidopsis thaliana AT2G33480 I 0.918
Cla001517 Citrullus lanatus Cla001517 I 0.958
Bo2g011120 Brassica oleracea Bo2g011120 I 0.912
Bo3g009040 Brassica oleracea Bo3g009040 I 0.911
Bo4g043670 Brassica oleracea Bo4g043670 I 0.900
Bo4g181990 Brassica oleracea Bo4g181990 I 0.895
Bo9g168950 Brassica oleracea Bo9g168950 I 0.906
Bra005492 Brassica rapa Bra005492 I 0.900
Bra006186 Brassica rapa Bra006186 I 0.900
Bra008849 Brassica rapa Bra008849 I 0.912
Bra021856 Brassica rapa Bra021856 I 0.895
Bra023395 Brassica rapa Bra023395 I 0.903
ANAC041 Arabidopsis lyrata fgenesh2_kg.4__1354__AT2G33480.1 I 0.918
GLYMA08G47520 Glycine max GLYMA08G47520 I 0.951
GLYMA18G53954 Glycine max GLYMA18G53954 I 0.951
MTR_7g005280 Medicago truncatula MTR_7g005280 I 0.923
Pm007070 Prunus mume Pm007070 I 0.960
ANAC083 Vitis vinifera VIT_01s0146g00280 I 0.949
TCM_014713 Theobroma cacao TCM_014713 I 0.899
POPTR_0003s16490 Populus trichocarpa POPTR_0003s16490 I 0.960
TCM_008477 Theobroma cacao TCM_008477 I 0.947
ANAC083 Arabidopsis lyrata scaffold_601328.1 I 0.934
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I 0.960
Cagra.0301s0034 Capsella grandiflora Cagra.0301s0034 N 0.894
cassava37235.valid.m1 Manihot esculenta cassava37235.valid.m1 N 0.882
Solyc01g009860.2 Solanum lycopersicum Solyc01g009860.2 N 0.887
MDP0000130686 Malus domestica MDP0000130686 N 0.874
Eucgr.H03362 Eucalyptus grandis Eucgr.H03362 N 0.872
POPTR_0015s11420 Populus trichocarpa POPTR_0015s11420 N 0.876
POPTR_0012s10530 Populus trichocarpa POPTR_0012s10530 N 0.873
Carubv10023833m.g Capsella rubella Carubv10023833m.g N 0.894
GSMUA_Achr10G11910_001 Musa acuminata GSMUA_Achr10G11910_001 N 0.898
gene06460-v1.0-hybrid Fragaria vesca gene06460-v1.0-hybrid N 0.885
GSMUA_Achr6G16560_001 Musa acuminata GSMUA_Achr6G16560_001 N 0.895
PGSC0003DMG400011891 Solanum tuberosum PGSC0003DMG400011891 N 0.887