CBN24070 (Caenorhabditis brenneri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBN24070 T301832_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-86
M02415_2.00 		Caenorhabditis elegans
KTGTAGTC
GACTACAM		 PBM
Weirauch et al.(2014)
pTH8598 		0.953 0.771
nhr-70
M00695_2.00 		Caenorhabditis elegans
NYTGTAGYYD
HRRCTACARN		 PBM
Narasimhan et al.(2015)
pTH9174 		0.767 0.657
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN24070 Nuclear receptor 8 77

Links

Other Nuclear receptor family TFs
Other Caenorhabditis brenneri TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nhr-70 Caenorhabditis elegans WBGene00003660 D 0.767
nhr-86 Caenorhabditis elegans WBGene00003676 D 0.953
L892_g8140 Steinernema scapterisci L892_g8140 I 0.836
nhr-16 Caenorhabditis elegans WBGene00003615 I 0.857
nhr-28 Caenorhabditis elegans WBGene00003624 I 0.899
nhr-109 Caenorhabditis elegans WBGene00003699 I 0.950
nhr-273 Caenorhabditis elegans WBGene00020460 I 0.942
EVEC_0001266201 Enterobius vermicularis EVEC_0001266201 I 0.826
L596_g27786 Steinernema carpocapsae L596_g27786 I 0.786
L596_g9106 Steinernema carpocapsae L596_g9106 I 0.803
L889_g9698 Steinernema feltiae L889_g9698 I 0.787
L889_g987 Steinernema feltiae L889_g987 I 0.787
L892_g10708 Steinernema scapterisci L892_g10708 I 0.794
nhr-12 Caenorhabditis elegans WBGene00003611 I 0.801
L892_g8144 Steinernema scapterisci L892_g8144 I 0.778
L892_g8145 Steinernema scapterisci L892_g8145 I 0.814
L893_g4569 Steinernema glaseri L893_g4569 I 0.815
L893_g9517 Steinernema glaseri L893_g9517 I 0.818
L898_g10723 Steinernema monticolum L898_g10723 I 0.802
L898_g28806 Steinernema monticolum L898_g28806 I 0.780
scaffold1235-EXSNAP2012.2 Pristionchus exspectatus scaffold1235-EXSNAP2012.2 I 0.813
scaffold183-EXSNAP2012.18 Pristionchus exspectatus scaffold183-EXSNAP2012.18 I 0.799
scaffold260-EXSNAP2012.15 Pristionchus exspectatus scaffold260-EXSNAP2012.15 I 0.797
SMUV_0000801801 Syphacia muris SMUV_0000801801 I 0.831
SMUV_0000886001 Syphacia muris SMUV_0000886001 I 0.828
CJA10576 Caenorhabditis japonica CJA10576 I 0.876
CBG03687 Caenorhabditis briggsae CBG03687 I 0.974
CBG03688 Caenorhabditis briggsae CBG03688 I 0.929
CBG12152 Caenorhabditis briggsae CBG12152 I 0.972
CBG16375 Caenorhabditis briggsae CBG16375 I 0.885
CBG20699 Caenorhabditis briggsae CBG20699 I 0.762
CBN03440 Caenorhabditis brenneri CBN03440 I 0.923
CBN03769 Caenorhabditis brenneri CBN03769 I 0.938
CBN04619 Caenorhabditis brenneri CBN04619 I 0.873
CBN16902 Caenorhabditis brenneri CBN16902 I 0.811
CJA04414 Caenorhabditis japonica CJA04414 I 0.912
CJA07390 Caenorhabditis japonica CJA07390 I 0.912
CRE07801 Caenorhabditis remanei CRE07801 I 0.796
CRE17310 Caenorhabditis remanei CRE17310 I 0.974
CRE17354 Caenorhabditis remanei CRE17354 I 0.981
CRE17355 Caenorhabditis remanei CRE17355 I 0.970
CRE18529 Caenorhabditis remanei CRE18529 I 0.973
CRE27174 Caenorhabditis remanei CRE27174 I 0.787
CRE27659 Caenorhabditis remanei CRE27659 I 0.889
PPA08785 Pristionchus pacificus PPA08785 I 0.799
PPA10478 Pristionchus pacificus PPA10478 I 0.797
PPA29361 Pristionchus pacificus PPA29361 I 0.786
CBG01395 Caenorhabditis briggsae CBG01395 N 0.804
CRE17311 Caenorhabditis remanei CRE17311 N 0.767