ENSP00000409227-D1 (Bos grunniens)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 ENSP00000409227-D1 T319660_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.992 0.992
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.992 0.992
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.992 0.992
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.992 0.992
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.992 0.992
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.992 0.992
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.992 0.992
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.992 0.992
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.992 0.992
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.992 0.992
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.992 0.992
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.992 0.992
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.938 0.938
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.938 0.938
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.938 0.938
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.938 0.938
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.938 0.938
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.938 0.938
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.938 0.938
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.938 0.938
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.938 0.938
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.938 0.938
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.938 0.938
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.938 0.938
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.915 0.915
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.915 0.915
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.915 0.915
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.915 0.915
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.915 0.915
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.915 0.915
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.915 0.915
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.915 0.915
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.915 0.915
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.915 0.915
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.915 0.915
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.915 0.915
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.731 0.731
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.731 0.731
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.731 0.731
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000409227-D1 Runt 63 192

Links

Other Runt family TFs
Other Bos grunniens TFs

322 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene24339-v1.0-hybrid Fragaria vesca gene24339-v1.0-hybrid N 0.000
Cla005525 Citrullus lanatus Cla005525 N 0.000
Pm014866 Prunus mume Pm014866 N 0.000
29872.m000537 Ricinus communis 29872.m000537 N 0.000
cassava29451.valid.m1 Manihot esculenta cassava29451.valid.m1 N 0.000
Cucsa.180010 Cucumis sativus Cucsa.180010 N 0.000
Aquca_030_00364 Aquilegia coerulea Aquca_030_00364 N 0.000
Bostr.25375s0003 Boechera stricta Bostr.25375s0003 N 0.000
Cagra.6263s0002 Capsella grandiflora Cagra.6263s0002 N 0.000
Carubv10004949m.g Capsella rubella Carubv10004949m.g N 0.000
Ciclev10011732m.g Citrus clementina Ciclev10011732m.g N 0.000
Eucgr.A00903 Eucalyptus grandis Eucgr.A00903 N 0.000
evm.TU.supercontig_8.295 Carica papaya evm.TU.supercontig_8.295 N 0.000
Ca_11130 Cicer arietinum Ca_11130 N 0.000
MDP0000269044 Malus domestica MDP0000269044 N 0.000
MDP0000287321 Malus domestica MDP0000287321 N 0.000
MDP0000289554 Malus domestica MDP0000289554 N 0.000
orange1.1g013903m.g Citrus sinensis orange1.1g013903m.g N 0.000
Pavir.Ba00637 Panicum virgatum Pavir.Ba00637 N 0.000
Pavir.Bb03100 Panicum virgatum Pavir.Bb03100 N 0.000
SapurV1A.0154s0180 Salix purpurea SapurV1A.0154s0180 N 0.000
SapurV1A.0295s0450 Salix purpurea SapurV1A.0295s0450 N 0.000
Thhalv10027784m.g Eutrema salsugineum Thhalv10027784m.g N 0.000
PK21090.1 Cannabis sativa PK21090.1 N 0.000
chr3.CM0460.360.nd Lotus japonicus chr3.CM0460.360.nd N 0.000
OPUNC07G18000 Oryza punctata OPUNC07G18000 N 0.000
BGIOSGA025964 Oryza indica BGIOSGA025964 N 0.000
fgenesh2_kg.7__3225__AT5G41920.1 Arabidopsis lyrata fgenesh2_kg.7__3225__AT5G41920.1 N 0.000
GLYMA11G10220 Glycine max GLYMA11G10220 N 0.000
GLYMA12G02530 Glycine max GLYMA12G02530 N 0.000
GRMZM2G106548 Zea mays GRMZM2G106548 N 0.000
LPERR07G16410 Leersia perrieri LPERR07G16410 N 0.000
MTR_4g076020 Medicago truncatula MTR_4g076020 N 0.000
OBART07G19080 Oryza barthii OBART07G19080 N 0.000
OGLUM07G18870 Oryza glumaepatula OGLUM07G18870 N 0.000
OMERI07G15800 Oryza meridionalis OMERI07G15800 N 0.000
ONIVA07G17430 Oryza nivara ONIVA07G17430 N 0.000
OPUNC07G17970 Oryza punctata OPUNC07G17970 N 0.000
SCL23 Arabidopsis thaliana AT5G41920 N 0.000
ORGLA07G0244600 Oryza glaberrima ORGLA07G0244600 N 0.000
ORUFI07G19860 Oryza rufipogon ORUFI07G19860 N 0.000
OS07G0567700 Oryza sativa OS07G0567700 N 0.000
PGSC0003DMG400011742 Solanum tuberosum PGSC0003DMG400011742 N 0.000
POPTR_0006s02220 Populus trichocarpa POPTR_0006s02220 N 0.000
POPTR_0016s02030 Populus trichocarpa POPTR_0016s02030 N 0.000
PRUPE_ppa005742mg Prunus persica PRUPE_ppa005742mg N 0.000
Si032551m.g Setaria italica Si032551m.g N 0.000
Solyc07g043330.1 Solanum lycopersicum Solyc07g043330.1 N 0.000
TCM_002021 Theobroma cacao TCM_002021 N 0.000
VIT_03s0017g01660 Vitis vinifera VIT_03s0017g01660 N 0.000