orange1.1g007404m.g (Citrus sinensis)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 orange1.1g007404m.g T324221_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g007404m Sigma 70 370 440
orange1.1g009803m Sigma 70 290 360
orange1.1g012567m Sigma 70 290 360
orange1.1g012691m Sigma 70 370 440
orange1.1g012710m Sigma 70 370 440
orange1.1g017761m Sigma 70 290 325

Links

Other Sigma 70 family TFs
Other Citrus sinensis TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf015824m Mimulus guttatus mgf015824m N 0.972
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.986
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.986
Eucgr.D01094 Eucalyptus grandis Eucgr.D01094 N 0.972
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 1.000
Carubv10008711m.g Capsella rubella Carubv10008711m.g N 0.958
Cagra.4395s0044 Capsella grandiflora Cagra.4395s0044 N 0.958
Bostr.25219s0090 Boechera stricta Bostr.25219s0090 N 0.958
Aquca_013_00876 Aquilegia coerulea Aquca_013_00876 N 0.958
Gorai.004G253700 Gossypium raimondii Gorai.004G253700 N 0.887
estExt_Genewise1.C_340313 Physcomitrella patens estExt_Genewise1.C_340313 N 0.775
estExt_fgenesh1_pg.C_280046 Physcomitrella patens estExt_fgenesh1_pg.C_280046 N 0.704
Cucsa.362600 Cucumis sativus Cucsa.362600 N 0.972
cassava14033.valid.m1 Manihot esculenta cassava14033.valid.m1 N 0.972
30148.m001412 Ricinus communis 30148.m001412 N 0.986
Pm025497 Prunus mume Pm025497 N 0.972
Cla007091 Citrullus lanatus Cla007091 N 0.986
Ca_04693 Cicer arietinum Ca_04693 N 0.901
Pavir.Hb00670 Panicum virgatum Pavir.Hb00670 N 0.718
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.986
PK16345.1 Cannabis sativa PK16345.1 N 0.986
Thhalv10007187m.g Eutrema salsugineum Thhalv10007187m.g N 0.958
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.972
SapurV1A.1189s0050 Salix purpurea SapurV1A.1189s0050 N 0.958
SapurV1A.0671s0070 Salix purpurea SapurV1A.0671s0070 N 0.722
Pavir.J05262 Panicum virgatum Pavir.J05262 N 0.718
Pavir.Ia03759 Panicum virgatum Pavir.Ia03759 N 0.700
SIGB Vitis vinifera VIT_15s0024g00640 N 0.972
MDP0000157652 Malus domestica MDP0000157652 N 0.958
Lus10020325.g Linum usitatissimum Lus10020325.g N 0.845
Lus10013642.g Linum usitatissimum Lus10013642.g N 0.718
Lus10005668.g Linum usitatissimum Lus10005668.g N 0.845
Lus10001339.g Linum usitatissimum Lus10001339.g N 0.718
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.972
SIGB Arabidopsis lyrata fgenesh2_kg.1__869__AT1G08540.1 N 0.958
OLONG_012202 Oryza longistaminata OLONG_012202 N 0.718
OGLUM11G12180 Oryza glumaepatula OGLUM11G12180 N 0.718
OB11G19800 Oryza brachyantha OB11G19800 N 0.718
MTR_3g118290 Medicago truncatula MTR_3g118290 N 0.915
LPERR11G10050 Leersia perrieri LPERR11G10050 N 0.718
GSMUA_Achr7G17330_001 Musa acuminata GSMUA_Achr7G17330_001 N 0.887
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.944
GLYMA04G00330 Glycine max GLYMA04G00330 N 0.930
OPUNC11G10590 Oryza punctata OPUNC11G10590 N 0.704
F775_14570 Aegilops tauschii F775_14570 N 0.700
BRADI4G19540 Brachypodium distachyon BRADI4G19540 N 0.700
Bra030732 Brassica rapa Bra030732 N 0.958
Bra018617 Brassica rapa Bra018617 N 0.930
Bo5g009070 Brassica oleracea Bo5g009070 N 0.930
BGIOSGA015860 Oryza indica BGIOSGA015860 N 0.718
SIGB Arabidopsis thaliana AT1G08540 N 0.958
Sb0010s016080 Sorghum bicolor Sb0010s016080 N 0.718
TRIUR3_30646 Triticum urartu TRIUR3_30646 N 0.700
Traes_4DL_65B3128BF Triticum aestivum Traes_4DL_65B3128BF N 0.700
Traes_4BL_9CB9E3F96 Triticum aestivum Traes_4BL_9CB9E3F96 N 0.700
Traes_4AS_26117D669 Triticum aestivum Traes_4AS_26117D669 N 0.700
Traes_4AL_26117D669 Triticum aestivum Traes_4AL_26117D669 N 0.700
TCM_025741 Theobroma cacao TCM_025741 N 0.986
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.944
Si026193m.g Setaria italica Si026193m.g N 0.718
AMTR_s00011p00258380 Amborella trichopoda AMTR_s00011p00258380 N 0.930
PRUPE_ppa006657mg Prunus persica PRUPE_ppa006657mg N 0.972
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N 0.944
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.944
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.930
OS11G0448400 Oryza sativa OS11G0448400 N 0.718
ORUFI11G13080 Oryza rufipogon ORUFI11G13080 N 0.718
ORGLA11G0105900 Oryza glaberrima ORGLA11G0105900 N 0.718