A1O1_06327 (Capronia coronata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 A1O1_06327 T326194_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fmf-1
M02491_2.00 		Neurospora crassa
TCTTTGTY
RACAAAGA		 PBM
Weirauch et al.(2014)
pTH8941 		0.609 0.536
ste11
M11342_2.00 		Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH		 Transfac
Matys et al.(2006)
F$STE11_01 		0.494 0.362
ste11
M11343_2.00 		Schizosaccharomyces pombe Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$STE11_02 		0.494 0.362
mat1-Mc
M11340_2.00 		Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN		 Transfac
Matys et al.(2006)
F$MAT1MC_01 		0.484 0.348
mat1-Mc
M11341_2.00 		Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR		 Transfac
Matys et al.(2006)
F$MAT1MC_02 		0.484 0.348
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EXJ85958 Sox 189 257

Links

Other Sox family TFs
Other Capronia coronata TFs

298 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF021 Arabidopsis thaliana AT1G71450 D
AC198403.3_FG001 Zea mays AC198403.3_FG001 I
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I
ERF022 Arabidopsis thaliana AT1G33760 I
BGIOSGA034227 Oryza indica BGIOSGA034227 I
Bo2g072910 Brassica oleracea Bo2g072910 I
Bo5g086680 Brassica oleracea Bo5g086680 I
Bo6g046850 Brassica oleracea Bo6g046850 I
Bo6g113020 Brassica oleracea Bo6g113020 I
Bo8g027240 Brassica oleracea Bo8g027240 I
Bra010210 Brassica rapa Bra010210 I
Bra016136 Brassica rapa Bra016136 I
Bra028009 Brassica rapa Bra028009 I
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I
F775_17299 Aegilops tauschii F775_17299 I
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I
GLYMA01G44130 Glycine max GLYMA01G44130 I
GLYMA01G44140 Glycine max GLYMA01G44140 I
GLYMA11G01640 Glycine max GLYMA11G01640 I
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I
LPERR11G07100 Leersia perrieri LPERR11G07100 I
MLOC_55144 Hordeum vulgare MLOC_55144 I
MTR_5g008550 Medicago truncatula MTR_5g008550 I
MTR_5g008590 Medicago truncatula MTR_5g008590 I
OB11G16300 Oryza brachyantha OB11G16300 I
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I
OMERI11G06840 Oryza meridionalis OMERI11G06840 I
ONIVA11G08160 Oryza nivara ONIVA11G08160 I
OPUNC11G07750 Oryza punctata OPUNC11G07750 I
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I
OS11G0242300 Oryza sativa OS11G0242300 I
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I
Sb05g007135 Sorghum bicolor Sb05g007135 I
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I
Si026882m.g Setaria italica Si026882m.g I
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I
TCM_036269 Theobroma cacao TCM_036269 I
TCM_036270 Theobroma cacao TCM_036270 I
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I
TRIUR3_32331 Triticum urartu TRIUR3_32331 I
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I
Cla012661 Citrullus lanatus Cla012661 I
Cla012665 Citrullus lanatus Cla012665 I
Pm004269 Prunus mume Pm004269 I
Pm004272 Prunus mume Pm004272 I
27805.m000021 Ricinus communis 27805.m000021 I
28118.m000034 Ricinus communis 28118.m000034 I
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I
cassava8552.m1 Manihot esculenta cassava8552.m1 I
Cucsa.237150 Cucumis sativus Cucsa.237150 I
Cucsa.237170 Cucumis sativus Cucsa.237170 I
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I
Carubv10011715m.g Capsella rubella Carubv10011715m.g I
Carubv10012215m.g Capsella rubella Carubv10012215m.g I
Carubv10022349m.g Capsella rubella Carubv10022349m.g I
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I
Lus10002953.g Linum usitatissimum Lus10002953.g I
Lus10006173.g Linum usitatissimum Lus10006173.g I
MDP0000122739 Malus domestica MDP0000122739 I
MDP0000122740 Malus domestica MDP0000122740 I
MDP0000151428 Malus domestica MDP0000151428 I
MDP0000283350 Malus domestica MDP0000283350 I
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I
Pavir.J22217 Panicum virgatum Pavir.J22217 I
Pavir.J26137 Panicum virgatum Pavir.J26137 I
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N
Lus10003513.g Linum usitatissimum Lus10003513.g N
Lus10041052.g Linum usitatissimum Lus10041052.g N