CBG16280 (Caenorhabditis briggsae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 CBG16280 T326868_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
CBG16280 Sox 36 104
CBG16280 Sox 110 178

Links

Other Sox family TFs
Other Caenorhabditis briggsae TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATBZIP42 Arabidopsis thaliana AT3G30530 D 0.000
BZIP53 Arabidopsis thaliana AT3G62420 D 0.000
Bo2g012800 Brassica oleracea Bo2g012800 I 0.000
Bo3g010620 Brassica oleracea Bo3g010620 I 0.000
Bo3g010750 Brassica oleracea Bo3g010750 I 0.000
Bo6g079450 Brassica oleracea Bo6g079450 I 0.000
Bo8g097830 Brassica oleracea Bo8g097830 I 0.000
Bo9g163740 Brassica oleracea Bo9g163740 I 0.000
Bra003500 Brassica rapa Bra003500 I 0.000
Bra006324 Brassica rapa Bra006324 I 0.000
Bra007679 Brassica rapa Bra007679 I 0.000
Bra008670 Brassica rapa Bra008670 I 0.000
Bra023540 Brassica rapa Bra023540 I 0.000
Bra039631 Brassica rapa Bra039631 I 0.000
ATBZIP53 Arabidopsis lyrata fgenesh2_kg.5__2740__AT3G62420.1 I 0.000
AtbZIP3 Arabidopsis lyrata fgenesh2_kg.6__1562__AT5G15830.1 I 0.000
GLYMA01G09510 Glycine max GLYMA01G09510 I 0.000
GLYMA01G40370 Glycine max GLYMA01G40370 I 0.000
GLYMA02G13960 Glycine max GLYMA02G13960 I 0.000
GLYMA04G01210 Glycine max GLYMA04G01210 I 0.000
GLYMA06G01240 Glycine max GLYMA06G01240 I 0.000
GLYMA11G04920 Glycine max GLYMA11G04920 I 0.000
GLYMA11G12240 Glycine max GLYMA11G12240 I 0.000
GLYMA12G04440 Glycine max GLYMA12G04440 I 0.000
GLYMA17G17100 Glycine max GLYMA17G17100 I 0.000
GLYMA19G05050 Glycine max GLYMA19G05050 I 0.000
GSMUA_Achr10G12910_001 Musa acuminata GSMUA_Achr10G12910_001 I 0.000
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I 0.000
GSMUA_Achr11G20700_001 Musa acuminata GSMUA_Achr11G20700_001 I 0.000
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I 0.000
GSMUA_Achr1G25340_001 Musa acuminata GSMUA_Achr1G25340_001 I 0.000
GSMUA_Achr2G06540_001 Musa acuminata GSMUA_Achr2G06540_001 I 0.000
GSMUA_Achr4G03790_001 Musa acuminata GSMUA_Achr4G03790_001 I 0.000
GSMUA_Achr5G05350_001 Musa acuminata GSMUA_Achr5G05350_001 I 0.000
GSMUA_Achr8G29960_001 Musa acuminata GSMUA_Achr8G29960_001 I 0.000
MTR_4g097440 Medicago truncatula MTR_4g097440 I 0.000
MTR_5g015090 Medicago truncatula MTR_5g015090 I 0.000
MTR_7g029400 Medicago truncatula MTR_7g029400 I 0.000
MTR_8g015250 Medicago truncatula MTR_8g015250 I 0.000
PGSC0003DMG400001916 Solanum tuberosum PGSC0003DMG400001916 I 0.000
PGSC0003DMG400003529 Solanum tuberosum PGSC0003DMG400003529 I 0.000
PGSC0003DMG400003701 Solanum tuberosum PGSC0003DMG400003701 I 0.000
PGSC0003DMG400007523 Solanum tuberosum PGSC0003DMG400007523 I 0.000
PGSC0003DMG400021431 Solanum tuberosum PGSC0003DMG400021431 I 0.000
PGSC0003DMG400022589 Solanum tuberosum PGSC0003DMG400022589 I 0.000
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I 0.000
POPTR_0002s19720 Populus trichocarpa POPTR_0002s19720 I 0.000
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I 0.000
POPTR_0007s14740 Populus trichocarpa POPTR_0007s14740 I 0.000
POPTR_0008s11260 Populus trichocarpa POPTR_0008s11260 I 0.000
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I 0.000
POPTR_0010s14530 Populus trichocarpa POPTR_0010s14530 I 0.000
POPTR_0014s11590 Populus trichocarpa POPTR_0014s11590 I 0.000
POPTR_0017s14490 Populus trichocarpa POPTR_0017s14490 I 0.000
PRUPE_ppa011366mg Prunus persica PRUPE_ppa011366mg I 0.000
PRUPE_ppa011589mg Prunus persica PRUPE_ppa011589mg I 0.000
PRUPE_ppa011644mg Prunus persica PRUPE_ppa011644mg I 0.000
SELMODRAFT_17884 Selaginella moellendorffii SELMODRAFT_17884 I 0.000
SELMODRAFT_17886 Selaginella moellendorffii SELMODRAFT_17886 I 0.000
Solyc01g109880.2 Solanum lycopersicum Solyc01g109880.2 I 0.000
Solyc02g084860.1 Solanum lycopersicum Solyc02g084860.1 I 0.000
Solyc02g092090.1 Solanum lycopersicum Solyc02g092090.1 I 0.000
Solyc03g046440.1 Solanum lycopersicum Solyc03g046440.1 I 0.000
Solyc04g005170.1 Solanum lycopersicum Solyc04g005170.1 I 0.000
TCM_000835 Theobroma cacao TCM_000835 I 0.000
VIT_01s0010g00930 Vitis vinifera VIT_01s0010g00930 I 0.000
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I 0.000
Ca_01004 Cicer arietinum Ca_01004 I 0.000
Ca_03512 Cicer arietinum Ca_03512 I 0.000
Ca_09362 Cicer arietinum Ca_09362 I 0.000
Cla005975 Citrullus lanatus Cla005975 I 0.000
Cla016748 Citrullus lanatus Cla016748 I 0.000
Cla016841 Citrullus lanatus Cla016841 I 0.000
Cla020641 Citrullus lanatus Cla020641 I 0.000
Pm002353 Prunus mume Pm002353 I 0.000
Pm015434 Prunus mume Pm015434 I 0.000
30076.m004659 Ricinus communis 30076.m004659 I 0.000
30131.m007078 Ricinus communis 30131.m007078 I 0.000
30138.m003866 Ricinus communis 30138.m003866 I 0.000
cassava23775.valid.m1 Manihot esculenta cassava23775.valid.m1 I 0.000
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I 0.000
cassava32522.m1 Manihot esculenta cassava32522.m1 I 0.000
cassava35454.valid.m1 Manihot esculenta cassava35454.valid.m1 I 0.000
cassava36049.valid.m1 Manihot esculenta cassava36049.valid.m1 I 0.000
cassava40461.m1 Manihot esculenta cassava40461.m1 I 0.000
cassava41140.m1 Manihot esculenta cassava41140.m1 I 0.000
cassava46237.m1 Manihot esculenta cassava46237.m1 I 0.000
cassava9577.m1 Manihot esculenta cassava9577.m1 I 0.000
Cucsa.109420 Cucumis sativus Cucsa.109420 I 0.000
Cucsa.174700 Cucumis sativus Cucsa.174700 I 0.000
Cucsa.238410 Cucumis sativus Cucsa.238410 I 0.000
Cucsa.284240 Cucumis sativus Cucsa.284240 I 0.000
gw1.83.117.1 Physcomitrella patens gw1.83.117.1 I 0.000
mgf017392m Mimulus guttatus mgf017392m I 0.000
mgf018581m Mimulus guttatus mgf018581m I 0.000
mgf021986m Mimulus guttatus mgf021986m I 0.000
Aquca_003_00556 Aquilegia coerulea Aquca_003_00556 I 0.000
Aquca_006_00040 Aquilegia coerulea Aquca_006_00040 I 0.000
Aquca_006_00360 Aquilegia coerulea Aquca_006_00360 I 0.000
Aquca_022_00003 Aquilegia coerulea Aquca_022_00003 I 0.000
Bostr.2902s0318 Boechera stricta Bostr.2902s0318 I 0.000
Cagra.0483s0006 Capsella grandiflora Cagra.0483s0006 I 0.000
Cagra.6845s0027 Capsella grandiflora Cagra.6845s0027 I 0.000
Carubv10002068m.g Capsella rubella Carubv10002068m.g I 0.000
Carubv10018852m.g Capsella rubella Carubv10018852m.g I 0.000
Ciclev10013334m.g Citrus clementina Ciclev10013334m.g I 0.000
Ciclev10027584m.g Citrus clementina Ciclev10027584m.g I 0.000
Ciclev10029834m.g Citrus clementina Ciclev10029834m.g I 0.000
Ciclev10032777m.g Citrus clementina Ciclev10032777m.g I 0.000
Eucgr.H02330 Eucalyptus grandis Eucgr.H02330 I 0.000
Eucgr.I02090 Eucalyptus grandis Eucgr.I02090 I 0.000
evm.TU.supercontig_129.74 Carica papaya evm.TU.supercontig_129.74 I 0.000
evm.TU.supercontig_18.43 Carica papaya evm.TU.supercontig_18.43 I 0.000
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I 0.000
gene04504-v1.0-hybrid Fragaria vesca gene04504-v1.0-hybrid I 0.000
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I 0.000
Gorai.001G144200 Gossypium raimondii Gorai.001G144200 I 0.000
Gorai.001G251000 Gossypium raimondii Gorai.001G251000 I 0.000
Gorai.002G126500 Gossypium raimondii Gorai.002G126500 I 0.000
Gorai.003G032100 Gossypium raimondii Gorai.003G032100 I 0.000
Gorai.007G056900 Gossypium raimondii Gorai.007G056900 I 0.000
Gorai.008G065300 Gossypium raimondii Gorai.008G065300 I 0.000
Gorai.008G085200 Gossypium raimondii Gorai.008G085200 I 0.000
Lus10010005.g Linum usitatissimum Lus10010005.g I 0.000
Lus10011722.g Linum usitatissimum Lus10011722.g I 0.000
Lus10013059.g Linum usitatissimum Lus10013059.g I 0.000
Lus10025024.g Linum usitatissimum Lus10025024.g I 0.000
Lus10029101.g Linum usitatissimum Lus10029101.g I 0.000
Lus10040428.g Linum usitatissimum Lus10040428.g I 0.000
MDP0000183562 Malus domestica MDP0000183562 I 0.000
MDP0000205823 Malus domestica MDP0000205823 I 0.000
MDP0000239026 Malus domestica MDP0000239026 I 0.000
MDP0000738631 Malus domestica MDP0000738631 I 0.000
MDP0000863909 Malus domestica MDP0000863909 I 0.000
MDP0000891108 Malus domestica MDP0000891108 I 0.000
MDP0000891899 Malus domestica MDP0000891899 I 0.000
orange1.1g029952m.g Citrus sinensis orange1.1g029952m.g I 0.000
orange1.1g042014m.g Citrus sinensis orange1.1g042014m.g I 0.000
orange1.1g043159m.g Citrus sinensis orange1.1g043159m.g I 0.000
orange1.1g044691m.g Citrus sinensis orange1.1g044691m.g I 0.000
SapurV1A.0060s0610 Salix purpurea SapurV1A.0060s0610 I 0.000
SapurV1A.0084s0340 Salix purpurea SapurV1A.0084s0340 I 0.000
SapurV1A.0158s0220 Salix purpurea SapurV1A.0158s0220 I 0.000
SapurV1A.0396s0080 Salix purpurea SapurV1A.0396s0080 I 0.000
SapurV1A.0432s0050 Salix purpurea SapurV1A.0432s0050 I 0.000
SapurV1A.3521s0020 Salix purpurea SapurV1A.3521s0020 I 0.000
Thhalv10006418m.g Eutrema salsugineum Thhalv10006418m.g I 0.000
Thhalv10015835m.g Eutrema salsugineum Thhalv10015835m.g I 0.000
PK07533.1 Cannabis sativa PK07533.1 I 0.000
chr2.CM0021.50.nd Lotus japonicus chr2.CM0021.50.nd I 0.000
chr2.CM0124.640.nd Lotus japonicus chr2.CM0124.640.nd I 0.000
AMTR_s00014p00097990 Amborella trichopoda AMTR_s00014p00097990 N 0.000
PGSC0003DMG400005476 Solanum tuberosum PGSC0003DMG400005476 N 0.000
VIT_18s0001g13040 Vitis vinifera VIT_18s0001g13040 N 0.000
Ca_15971 Cicer arietinum Ca_15971 N 0.000
28976.m000155 Ricinus communis 28976.m000155 N 0.000
cassava1498.valid.m1 Manihot esculenta cassava1498.valid.m1 N 0.000
Cucsa.043170 Cucumis sativus Cucsa.043170 N 0.000
mgf004063m Mimulus guttatus mgf004063m N 0.000
Aquca_024_00067 Aquilegia coerulea Aquca_024_00067 N 0.000
Ciclev10002731m.g Citrus clementina Ciclev10002731m.g N 0.000
Eucgr.F01867 Eucalyptus grandis Eucgr.F01867 N 0.000
Eucgr.G01645 Eucalyptus grandis Eucgr.G01645 N 0.000
Eucgr.L01789 Eucalyptus grandis Eucgr.L01789 N 0.000
Gorai.012G155000 Gossypium raimondii Gorai.012G155000 N 0.000
Lus10019273.g Linum usitatissimum Lus10019273.g N 0.000
Lus10024279.g Linum usitatissimum Lus10024279.g N 0.000
MDP0000261154 Malus domestica MDP0000261154 N 0.000
orange1.1g041765m.g Citrus sinensis orange1.1g041765m.g N 0.000
SapurV1A.0235s0220 Salix purpurea SapurV1A.0235s0220 N 0.000
SapurV1A.0608s0130 Salix purpurea SapurV1A.0608s0130 N 0.000
PK01815.1 Cannabis sativa PK01815.1 N 0.000