cassava19406.valid.m1 (Manihot esculenta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 cassava19406.valid.m1 T333926_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava19406.valid.m1 Sox 160 204

Links

Other Sox family TFs
Other Manihot esculenta TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.563
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.563
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.563
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.563
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.650
30116.m000393 Ricinus communis 30116.m000393 N 0.638
mgf000387m Mimulus guttatus mgf000387m N 0.601
mgf013454m Mimulus guttatus mgf013454m N 0.601
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.623
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.608
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.639
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.571
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.627
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.681
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.565
MDP0000597087 Malus domestica MDP0000597087 N 0.560
MDP0000634922 Malus domestica MDP0000634922 N 0.619
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.608
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.639
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.563
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.563
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.608
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.606
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.541
PK04394.1 Cannabis sativa PK04394.1 N 0.627
PK16821.1 Cannabis sativa PK16821.1 N 0.657
OS02G0770600 Oryza sativa OS02G0770600 N 0.563
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.523
F775_20121 Aegilops tauschii F775_20121 N 0.601
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.526
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.607
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.563
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.601
OB02G40920 Oryza brachyantha OB02G40920 N 0.557
OB07G29110 Oryza brachyantha OB07G29110 N 0.563
OBART02G34050 Oryza barthii OBART02G34050 N 0.563
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.563
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.563
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.563
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.563
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.595
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.581
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.606
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.604
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.663
Si017699m.g Setaria italica Si017699m.g N 0.563
TCM_006422 Theobroma cacao TCM_006422 N 0.625
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.601
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.601
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.679
VIT_18s0001g03950 Vitis vinifera VIT_18s0001g03950 N 0.553
Cla002005 Citrullus lanatus Cla002005 N 0.650