PK16821.1 (Cannabis sativa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PK16821.1 T334932_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PK16821.1 Sox 163 211

Links

Other Sox family TFs
Other Cannabis sativa TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla002005 Citrullus lanatus Cla002005 N 0.723
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.723
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.716
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.657
30116.m000393 Ricinus communis 30116.m000393 N 0.649
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.642
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.641
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.640
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.638
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.630
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.630
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.624
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.616
VIT_18s0001g03950 Vitis vinifera VIT_18s0001g03950 N 0.601
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.598
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.598
OB02G40920 Oryza brachyantha OB02G40920 N 0.598
OB07G29110 Oryza brachyantha OB07G29110 N 0.598
OBART02G34050 Oryza barthii OBART02G34050 N 0.598
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.598
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.598
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.598
OS02G0770600 Oryza sativa OS02G0770600 N 0.598
Si017699m.g Setaria italica Si017699m.g N 0.598
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.598
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.598
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.598
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.598
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.598
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.598
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.594
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.594
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.594
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.587
MDP0000634922 Malus domestica MDP0000634922 N 0.584
PK04394.1 Cannabis sativa PK04394.1 N 0.581
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.574
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.570
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.570
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.561
F775_20121 Aegilops tauschii F775_20121 N 0.560
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.560
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.560
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.560
mgf000387m Mimulus guttatus mgf000387m N 0.560
mgf013454m Mimulus guttatus mgf013454m N 0.560
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.558
TCM_006422 Theobroma cacao TCM_006422 N 0.558
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.525
MDP0000597087 Malus domestica MDP0000597087 N 0.514
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.498
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.496