Ciclev10001601m.g (Citrus clementina)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ciclev10001601m.g T334429_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10001598m Sox 168 210
Ciclev10001601m Sox 168 210
Ciclev10001603m Sox 168 210

Links

Other Sox family TFs
Other Citrus clementina TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.741
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.730
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.713
30116.m000393 Ricinus communis 30116.m000393 N 0.705
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.679
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.679
OB07G29110 Oryza brachyantha OB07G29110 N 0.679
OBART02G34050 Oryza barthii OBART02G34050 N 0.679
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.679
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.679
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.679
OS02G0770600 Oryza sativa OS02G0770600 N 0.679
Si017699m.g Setaria italica Si017699m.g N 0.679
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.679
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.679
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.679
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.679
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.679
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.679
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.678
OB02G40920 Oryza brachyantha OB02G40920 N 0.673
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.666
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.666
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.663
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.646
F775_20121 Aegilops tauschii F775_20121 N 0.641
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.641
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.641
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.641
mgf000387m Mimulus guttatus mgf000387m N 0.641
mgf013454m Mimulus guttatus mgf013454m N 0.641
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.639
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.636
Cla002005 Citrullus lanatus Cla002005 N 0.636
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.636
PK16821.1 Cannabis sativa PK16821.1 N 0.630
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.629
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.626
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.626
PK04394.1 Cannabis sativa PK04394.1 N 0.621
TCM_006422 Theobroma cacao TCM_006422 N 0.619
VIT_18s0001g03950 Vitis vinifera VIT_18s0001g03950 N 0.618
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.614
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.608
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.605
MDP0000597087 Malus domestica MDP0000597087 N 0.600
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.598
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.563
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.558
MDP0000634922 Malus domestica MDP0000634922 N 0.555
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.496
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.477