CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000634922
(
Malus domestica
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
MDP0000634922
T334623_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000634922
Sox
163
208
QENCSFVGNYKELKRHVKEEHPSARPREVDPDLEQKWRSLEHEXET
Links
Other
Sox
family TFs
Other
Malus domestica
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_49.133
Carica papaya
evm.TU.supercontig_49.133
N
0.676
gene11787-v1.0-hybrid
Fragaria vesca
gene11787-v1.0-hybrid
N
0.661
GSMUA_Achr8G18160_001
Musa acuminata
GSMUA_Achr8G18160_001
N
0.649
cassava19406.valid.m1
Manihot esculenta
cassava19406.valid.m1
N
0.619
Aquca_014_00165
Aquilegia coerulea
Aquca_014_00165
N
0.615
evm.TU.supercontig_49.134
Carica papaya
evm.TU.supercontig_49.134
N
0.614
orange1.1g020440m.g
Citrus sinensis
orange1.1g020440m.g
N
0.608
Ciclev10001827m.g
Citrus clementina
Ciclev10001827m.g
N
0.608
PRUPE_ppa007591mg
Prunus persica
PRUPE_ppa007591mg
N
0.603
PK04394.1
Cannabis sativa
PK04394.1
N
0.602
VIT_12s0034g00960
Vitis vinifera
VIT_12s0034g00960
N
0.601
PK16821.1
Cannabis sativa
PK16821.1
N
0.584
mgf000387m
Mimulus guttatus
mgf000387m
N
0.581
TRIUR3_20834
Triticum urartu
TRIUR3_20834
N
0.581
F775_20121
Aegilops tauschii
F775_20121
N
0.581
Traes_6DL_647FC758E1
Triticum aestivum
Traes_6DL_647FC758E1
N
0.581
mgf013454m
Mimulus guttatus
mgf013454m
N
0.581
MLOC_54605
Hordeum vulgare
MLOC_54605
N
0.581
GSMUA_Achr2G01240_001
Musa acuminata
GSMUA_Achr2G01240_001
N
0.579
Thhalv10028879m.g
Eutrema salsugineum
Thhalv10028879m.g
N
0.572
Cucsa.239250
Cucumis sativus
Cucsa.239250
N
0.572
Cla002005
Citrullus lanatus
Cla002005
N
0.572
PGSC0003DMG400023744
Solanum tuberosum
PGSC0003DMG400023744
N
0.568
POPTR_0003s01620
Populus trichocarpa
POPTR_0003s01620
N
0.566
Ciclev10001601m.g
Citrus clementina
Ciclev10001601m.g
N
0.555
orange1.1g017878m.g
Citrus sinensis
orange1.1g017878m.g
N
0.555
SapurV1A.0647s0030
Salix purpurea
SapurV1A.0647s0030
N
0.555
Pavir.J01310
Panicum virgatum
Pavir.J01310
N
0.543
OB07G29110
Oryza brachyantha
OB07G29110
N
0.543
Pavir.Aa00349
Panicum virgatum
Pavir.Aa00349
N
0.543
LPERR02G27910
Leersia perrieri
LPERR02G27910
N
0.543
ORUFI02G35580
Oryza rufipogon
ORUFI02G35580
I
0.543
OGLUM02G35200
Oryza glumaepatula
OGLUM02G35200
I
0.543
ONIVA02G36110
Oryza nivara
ONIVA02G36110
I
0.543
OMERI02G32400
Oryza meridionalis
OMERI02G32400
I
0.543
OB02G40920
Oryza brachyantha
OB02G40920
N
0.543
OBART02G34050
Oryza barthii
OBART02G34050
N
0.543
OS02G0770600
Oryza sativa
OS02G0770600
N
0.543
Si017699m.g
Setaria italica
Si017699m.g
N
0.543
BGIOSGA009119
Oryza indica
BGIOSGA009119
N
0.543
ORGLA02G0294700
Oryza glaberrima
ORGLA02G0294700
N
0.543
OPUNC02G31450
Oryza punctata
OPUNC02G31450
N
0.543
OLONG_015646
Oryza longistaminata
OLONG_015646
N
0.543
MDP0000597087
Malus domestica
MDP0000597087
N
0.535
30116.m000393
Ricinus communis
30116.m000393
N
0.530
TCM_006422
Theobroma cacao
TCM_006422
N
0.528
Gorai.005G260200
Gossypium raimondii
Gorai.005G260200
N
0.519
SapurV1A.0869s0080
Salix purpurea
SapurV1A.0869s0080
N
0.508
POPTR_0001s21610
Populus trichocarpa
POPTR_0001s21610
N
0.508
PGSC0003DMG400026151
Solanum tuberosum
PGSC0003DMG400026151
N
0.503
BRADI3G57700
Brachypodium distachyon
BRADI3G57700
N
0.502
VIT_18s0001g03950
Vitis vinifera
VIT_18s0001g03950
N
0.469