estExt_fgenesh3_pg.C_20344 (Chlorella NC64A)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 estExt_fgenesh3_pg.C_20344 T334044_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh3_pg.C_20344 Sox 2 74

Links

Other Sox family TFs
Other Chlorella NC64A TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF019 Arabidopsis thaliana AT1G22810 D
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I
ERF020 Arabidopsis thaliana AT1G71520 I
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I
Carubv10011955m.g Capsella rubella Carubv10011955m.g I
Carubv10022408m.g Capsella rubella Carubv10022408m.g I
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I
Lus10006179.g Linum usitatissimum Lus10006179.g I
Lus10009468.g Linum usitatissimum Lus10009468.g I
Lus10041044.g Linum usitatissimum Lus10041044.g I
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I
MTR_5g008790 Medicago truncatula MTR_5g008790 I
Bo2g072950 Brassica oleracea Bo2g072950 I
Bo5g038890 Brassica oleracea Bo5g038890 I
Bo6g113060 Brassica oleracea Bo6g113060 I
Bo7g057680 Brassica oleracea Bo7g057680 I
Bra007974 Brassica rapa Bra007974 I
Bra012345 Brassica rapa Bra012345 I
Bra016133 Brassica rapa Bra016133 I
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I
GLYMA11G01700 Glycine max GLYMA11G01700 I
mgf010891m Mimulus guttatus mgf010891m I
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I
TCM_036224 Theobroma cacao TCM_036224 I
Ca_15055 Cicer arietinum Ca_15055 I
Cla012182 Citrullus lanatus Cla012182 I
29938.m000611 Ricinus communis 29938.m000611 I
cassava8476.m1 Manihot esculenta cassava8476.m1 I
Cucsa.088640 Cucumis sativus Cucsa.088640 N