Lus10009468.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10009468.g T008768_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF019
M01092_2.00 		Arabidopsis thaliana
CRCCGRCV
BGYCGGYG		 PBM
Lambert et al.(2019)
pTH11534 		0.701 0.760
ERF019
M06571_2.00 		Arabidopsis thaliana
HDYCACCGACAHNNN
NNNDTGTCGGTGRHD		 Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a 		0.701 0.760
ERF019
M06572_2.00 		Arabidopsis thaliana
DYCACCGHCRHHDYC
GRHDDYGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g22810_col 		0.701 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10009468 AP2 13 64

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29938.m000611 Ricinus communis 29938.m000611 I 0.783
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.777
Cla012182 Citrullus lanatus Cla012182 I 0.775
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.775
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.769
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.764
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.764
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.753
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.752
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.752
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.752
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.751
Ca_15055 Cicer arietinum Ca_15055 I 0.751
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.738
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.736
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.736
Cucsa.088640 Cucumis sativus Cucsa.088640 N 0.734
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.730
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.721
mgf010891m Mimulus guttatus mgf010891m I 0.714
PGSC0003DMG400008734 Solanum tuberosum PGSC0003DMG400008734 N 0.710
Bo2g072950 Brassica oleracea Bo2g072950 I 0.707
Bra007974 Brassica rapa Bra007974 I 0.707
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.707
Aquca_001_00483 Aquilegia coerulea Aquca_001_00483 N 0.704
PRUPE_ppa020605mg Prunus persica PRUPE_ppa020605mg N 0.703
Pm004265 Prunus mume Pm004265 N 0.703
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.703
ERF019 Arabidopsis thaliana AT1G22810 D 0.701
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.701
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.701
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.701
Bo6g113060 Brassica oleracea Bo6g113060 I 0.698
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.697
TCM_036224 Theobroma cacao TCM_036224 I 0.695
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.694
MDP0000932292 Malus domestica MDP0000932292 N 0.694
ERF020 Arabidopsis thaliana AT1G71520 I 0.692
Bo5g038890 Brassica oleracea Bo5g038890 I 0.692
Bra012345 Brassica rapa Bra012345 I 0.692
Bra024539 Brassica rapa Bra024539 I 0.692
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.692
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.692
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.692
gene27062-v1.0-hybrid Fragaria vesca gene27062-v1.0-hybrid N 0.692
Bra016133 Brassica rapa Bra016133 I 0.690
Solyc01g057080.1 Solanum lycopersicum Solyc01g057080.1 N 0.687
Bo7g057680 Brassica oleracea Bo7g057680 I 0.684
cassava9593.m1 Manihot esculenta cassava9593.m1 N 0.680