Thhalv10019510m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10019510m.g T009965_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF019
M01092_2.00 		Arabidopsis thaliana
CRCCGRCV
BGYCGGYG		 PBM
Lambert et al.(2019)
pTH11534 		0.827 0.920
ERF019
M06571_2.00 		Arabidopsis thaliana
HDYCACCGACAHNNN
NNNDTGTCGGTGRHD		 Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a 		0.827 0.920
ERF019
M06572_2.00 		Arabidopsis thaliana
DYCACCGHCRHHDYC
GRHDDYGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g22810_col 		0.827 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019510m AP2 13 64

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g113060 Brassica oleracea Bo6g113060 I 0.847
ERF020 Arabidopsis thaliana AT1G71520 I 0.841
Bo5g038890 Brassica oleracea Bo5g038890 I 0.841
Bra012345 Brassica rapa Bra012345 I 0.841
Bra024539 Brassica rapa Bra024539 I 0.841
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.841
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.841
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.841
Bo2g072950 Brassica oleracea Bo2g072950 I 0.834
Bra007974 Brassica rapa Bra007974 I 0.834
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.834
Bo7g057680 Brassica oleracea Bo7g057680 I 0.833
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.833
ERF019 Arabidopsis thaliana AT1G22810 D 0.827
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.827
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.827
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.827
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.826
Bra016133 Brassica rapa Bra016133 I 0.825
TCM_036224 Theobroma cacao TCM_036224 I 0.769
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.768
29938.m000611 Ricinus communis 29938.m000611 I 0.731
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.731
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.731
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.727
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.726
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.724
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.724
Cla012182 Citrullus lanatus Cla012182 I 0.722
Ca_15055 Cicer arietinum Ca_15055 I 0.719
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.714
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.712
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.711
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.710
mgf010891m Mimulus guttatus mgf010891m I 0.706
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.704
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.702
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.697
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.697
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.696
Cucsa.088640 Cucumis sativus Cucsa.088640 N 0.681