cassava8476.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava8476.m1 T006973_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF019
M01092_2.00 		Arabidopsis thaliana
CRCCGRCV
BGYCGGYG		 PBM
Lambert et al.(2019)
pTH11534 		0.707 0.760
ERF019
M06571_2.00 		Arabidopsis thaliana
HDYCACCGACAHNNN
NNNDTGTCGGTGRHD		 Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a 		0.707 0.760
ERF019
M06572_2.00 		Arabidopsis thaliana
DYCACCGHCRHHDYC
GRHDDYGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g22810_col 		0.707 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava8476.m1 AP2 21 72

Links

Other AP2 family TFs
Other Manihot esculenta TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29938.m000611 Ricinus communis 29938.m000611 I 0.808
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.797
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.797
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.785
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.780
Ca_15055 Cicer arietinum Ca_15055 I 0.780
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.780
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.779
Cla012182 Citrullus lanatus Cla012182 I 0.778
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.777
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.775
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.775
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.773
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.771
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.770
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.765
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.763
Cucsa.088640 Cucumis sativus Cucsa.088640 N 0.737
mgf010891m Mimulus guttatus mgf010891m I 0.735
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.726
TCM_036224 Theobroma cacao TCM_036224 I 0.726
Bo6g113060 Brassica oleracea Bo6g113060 I 0.726
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.724
MDP0000932292 Malus domestica MDP0000932292 N 0.722
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.721
gene27062-v1.0-hybrid Fragaria vesca gene27062-v1.0-hybrid N 0.721
Bra012345 Brassica rapa Bra012345 I 0.720
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.720
Bra024539 Brassica rapa Bra024539 I 0.720
ERF020 Arabidopsis thaliana AT1G71520 I 0.720
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.720
Bo5g038890 Brassica oleracea Bo5g038890 I 0.720
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.720
cassava9593.m1 Manihot esculenta cassava9593.m1 N 0.719
PGSC0003DMG400008734 Solanum tuberosum PGSC0003DMG400008734 N 0.716
Aquca_001_00483 Aquilegia coerulea Aquca_001_00483 N 0.714
Bra007974 Brassica rapa Bra007974 I 0.713
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.713
Bo2g072950 Brassica oleracea Bo2g072950 I 0.713
Bo7g057680 Brassica oleracea Bo7g057680 I 0.712
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.707
ERF019 Arabidopsis thaliana AT1G22810 D 0.707
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.707
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.707
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.706
Pm004265 Prunus mume Pm004265 N 0.706
PRUPE_ppa020605mg Prunus persica PRUPE_ppa020605mg N 0.706
Bra016133 Brassica rapa Bra016133 I 0.704
Solyc01g057080.1 Solanum lycopersicum Solyc01g057080.1 N 0.696
TRAES3BF106000020CFD_g Triticum aestivum TRAES3BF106000020CFD_g N 0.690
OB01G48490 Oryza brachyantha OB01G48490 N 0.684
GLYMA01G44230 Glycine max GLYMA01G44230 N 0.683
BGIOSGA004939 Oryza indica BGIOSGA004939 N 0.682
ORUFI01G43070 Oryza rufipogon ORUFI01G43070 N 0.682
ONIVA01G44590 Oryza nivara ONIVA01G44590 N 0.682
OMERI01G36600 Oryza meridionalis OMERI01G36600 N 0.682
OGLUM01G43950 Oryza glumaepatula OGLUM01G43950 N 0.682
OS01G0885900 Oryza sativa OS01G0885900 N 0.682
GSMUA_Achr10G04450_001 Musa acuminata GSMUA_Achr10G04450_001 N 0.678
Sb03g042060 Sorghum bicolor Sb03g042060 N 0.677