VIT_19s0014g01680 (Vitis vinifera)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 VIT_19s0014g01680 T344504_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.959 0.622
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.959 0.622
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.956 0.555
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.956 0.555
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.956 0.555
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.940 0.521
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.898 0.437
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.895 0.429
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.887 0.412
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.876 0.387
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.856 0.378
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.848 0.345
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.845 0.387
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.845 0.387
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_19s0014g01680.t01 TCP 38 250

Links

Other TCP family TFs
Other Vitis vinifera TFs

422 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.000
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.000
Thhalv10002956m.g Eutrema salsugineum Thhalv10002956m.g I 0.000
Thhalv10002996m.g Eutrema salsugineum Thhalv10002996m.g I 0.000
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.000
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.000
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.000
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.000
Thhalv10019681m.g Eutrema salsugineum Thhalv10019681m.g I 0.000
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.000
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.000
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.000
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.000
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.000
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.000
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.000
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.000
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.000
Bo2g104810 Brassica oleracea Bo2g104810 I 0.000
Bo9g078450 Brassica oleracea Bo9g078450 I 0.000
Bra018490 Brassica rapa Bra018490 I 0.000
Bra029469 Brassica rapa Bra029469 I 0.000
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.000
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.000
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.000
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.000
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.000
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.000
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.000
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.000
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.000
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.000
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.000
Thhalv10019667m.g Eutrema salsugineum Thhalv10019667m.g N 0.000
Thhalv10019758m.g Eutrema salsugineum Thhalv10019758m.g N 0.000