Lus10038028.g (Linum usitatissimum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Lus10038028.g T356466_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY42
M07404_2.00 		Arabidopsis thaliana
NDWRGTCAACDNNNNDNNHNN
NNDNNHNNNNHGTTGACYWHN		 Dap-seq
OMalley et al.(2016)
WRKY42_col_a 		0.884 0.915
WRKY42
M07405_2.00 		Arabidopsis thaliana
HNDNNNWRGTCAACKNHNDD
HHNDNMGTTGACYWNNNHND		 Dap-seq
OMalley et al.(2016)
WRKY42_colamp_a 		0.884 0.915
WRKY47
M00732_2.00 		Arabidopsis thaliana
NNRGTCAACKN
NMGTTGACYNN		 PBM
Chang et al.(2013)
pTH7913 		0.880 0.881
WRKY47
M07402_2.00 		Arabidopsis thaliana
WRGTCAAMGNHVDK
MHBDNCKTTGACYW		 Dap-seq
OMalley et al.(2016)
WRKY47_col_a 		0.880 0.881
WRKY47
M07403_2.00 		Arabidopsis thaliana
NNNHWRGTCAACKNHNNNN
NNNNDNMGTTGACYWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY47_colamp_a 		0.880 0.881
WRKY6
M07377_2.00 		Arabidopsis thaliana
DNNNHNDHNHNRGTCAACG
CGTTGACYNDNDHNDNNNH		 Dap-seq
OMalley et al.(2016)
WRKY6_col_a 		0.879 0.915
WRKY6
M07378_2.00 		Arabidopsis thaliana
NNHNWRGTCAACKNH
DNMGTTGACYWNDNN		 Dap-seq
OMalley et al.(2016)
WRKY6_colamp_a 		0.879 0.915
WRKY31
M07408_2.00 		Arabidopsis thaliana
NNNNHNNNNNDRGTCAACG
CGTTGACYHNNNNNDNNNN		 Dap-seq
OMalley et al.(2016)
WRKY31_col_a 		0.875 0.915
WRKY31
M07409_2.00 		Arabidopsis thaliana
NHWRGTCAACKNH
DNMGTTGACYWDN		 Dap-seq
OMalley et al.(2016)
WRKY31_colamp_a 		0.875 0.915
WRKY40
M02548_2.00 		Arabidopsis thaliana
NRGTCAWN
NWTGACYN		 PBM
Weirauch et al.(2014)
pTH8398 		0.811 0.610
WRKY40
M07379_2.00 		Arabidopsis thaliana
NNNAAAGTCAAVR
YBTTGACTTTNNN		 Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a 		0.811 0.610
WRKY40
M07380_2.00 		Arabidopsis thaliana
NNVAAAGTCAAVRNH
DNYBTTGACTTTBNN		 Dap-seq
OMalley et al.(2016)
WRKY40_col 		0.811 0.610
WRKY40
M08180_2.00 		Arabidopsis thaliana
NNAGTCAANN
NNTTGACTNN		 ChIP-seq
Mathelier et al.(2014)
MA1085.2 		0.811 0.610
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10038028 WRKY 202 260

Links

Other WRKY family TFs
Other Linum usitatissimum TFs

676 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I
OB01G34910 Oryza brachyantha OB01G34910 I
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I
F775_05073 Aegilops tauschii F775_05073 I
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I
HMGB5 Arabidopsis thaliana AT4G35570 I
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N
29693.m002035 Ricinus communis 29693.m002035 N
TCM_029514 Theobroma cacao TCM_029514 N
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N
Cucsa.047620 Cucumis sativus Cucsa.047620 N
mgf009922m Mimulus guttatus mgf009922m N
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N
Carubv10024236m.g Capsella rubella Carubv10024236m.g N
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N
Ca_05164 Cicer arietinum Ca_05164 N
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N
Lus10015268.g Linum usitatissimum Lus10015268.g N
Lus10025391.g Linum usitatissimum Lus10025391.g N
MDP0000143506 Malus domestica MDP0000143506 N
MDP0000170945 Malus domestica MDP0000170945 N
MDP0000392251 Malus domestica MDP0000392251 N
MDP0000695104 Malus domestica MDP0000695104 N
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N
Pavir.J05892 Panicum virgatum Pavir.J05892 N
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N
PK22924.1 Cannabis sativa PK22924.1 N
LPERR01G21970 Leersia perrieri LPERR01G21970 N
AT2G34450 Arabidopsis thaliana AT2G34450 N
BGIOSGA004165 Oryza indica BGIOSGA004165 N
BGIOSGA004167 Oryza indica BGIOSGA004167 N
Bo4g182600 Brassica oleracea Bo4g182600 N
Bra021911 Brassica rapa Bra021911 N
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N
GLYMA05G25900 Glycine max GLYMA05G25900 N
GLYMA08G08840 Glycine max GLYMA08G08840 N
GRMZM2G024247 Zea mays GRMZM2G024247 N
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N
GUITHDRAFT_114564 Guillardia theta GUITHDRAFT_114564 N
GUITHDRAFT_76406 Guillardia theta GUITHDRAFT_76406 N
Ca_05162 Cicer arietinum Ca_05162 N
MLOC_7069 Hordeum vulgare MLOC_7069 N
MTR_4g094622 Medicago truncatula MTR_4g094622 N
OBART01G25720 Oryza barthii OBART01G25720 N
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N
OS01G0666200 Oryza sativa OS01G0666200 N
OSTLU_19125 Ostreococcus lucimarinus OSTLU_19125 N
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N
Sb03g030540 Sorghum bicolor Sb03g030540 N
Si003021m.g Setaria italica Si003021m.g N
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N