CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bo2g072950
(
Brassica oleracea
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bo2g072950
T000753_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF019
M01092_2.00
Arabidopsis thaliana
CRCCGRCV
BGYCGGYG
PBM
Lambert et al.(2019)
pTH11534
0.838
0.920
ERF019
M06571_2.00
Arabidopsis thaliana
HDYCACCGACAHNNN
NNNDTGTCGGTGRHD
Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a
0.838
0.920
ERF019
M06572_2.00
Arabidopsis thaliana
DYCACCGHCRHHDYC
GRHDDYGDCGGTGRH
Dap-seq
OMalley et al.(2016)
At1g22810_col
0.838
0.920
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo2g072950.1
AP2
12
63
AKYKGIRRRKWGKWVSEIRVPRTRERLWLGSFSTAEGAAVAHDVAFFCLHRP
Links
Other
AP2
family TFs
Other
Brassica oleracea
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29938.m000611
Ricinus communis
29938.m000611
I
0.719
Bo5g038890
Brassica oleracea
Bo5g038890
I
0.829
Bo6g113060
Brassica oleracea
Bo6g113060
I
0.836
Bo7g057680
Brassica oleracea
Bo7g057680
I
0.821
Bostr.10273s0198
Boechera stricta
Bostr.10273s0198
I
0.829
Bostr.12659s0135
Boechera stricta
Bostr.12659s0135
I
0.837
Bra007974
Brassica rapa
Bra007974
I
0.846
Bra012345
Brassica rapa
Bra012345
I
0.829
Bra016133
Brassica rapa
Bra016133
I
0.814
Bra024539
Brassica rapa
Bra024539
I
0.829
Cagra.0114s0023
Capsella grandiflora
Cagra.0114s0023
I
0.838
Cagra.2418s0007
Capsella grandiflora
Cagra.2418s0007
I
0.829
Carubv10011955m.g
Capsella rubella
Carubv10011955m.g
I
0.838
Carubv10022408m.g
Capsella rubella
Carubv10022408m.g
I
0.829
cassava8476.m1
Manihot esculenta
cassava8476.m1
I
0.713
Ca_15055
Cicer arietinum
Ca_15055
I
0.706
chr2.CM0018.340.nd
Lotus japonicus
chr2.CM0018.340.nd
I
0.702
Ciclev10023345m.g
Citrus clementina
Ciclev10023345m.g
I
0.718
Cla012182
Citrullus lanatus
Cla012182
I
0.709
ERF019
Arabidopsis thaliana
AT1G22810
D
0.838
ERF020
Arabidopsis thaliana
AT1G71520
I
0.829
Eucgr.F02967
Eucalyptus grandis
Eucgr.F02967
I
0.756
evm.TU.supercontig_21.63
Carica papaya
evm.TU.supercontig_21.63
I
0.689
fgenesh2_kg.2__1411__AT1G71520.1
Arabidopsis lyrata
fgenesh2_kg.2__1411__AT1G71520.1
I
0.821
GLYMA11G01700
Glycine max
GLYMA11G01700
I
0.699
Lus10006179.g
Linum usitatissimum
Lus10006179.g
I
0.697
Lus10009468.g
Linum usitatissimum
Lus10009468.g
I
0.707
Lus10041044.g
Linum usitatissimum
Lus10041044.g
I
0.691
mgf010891m
Mimulus guttatus
mgf010891m
I
0.693
MTR_5g008790
Medicago truncatula
MTR_5g008790
I
0.714
orange1.1g045327m.g
Citrus sinensis
orange1.1g045327m.g
I
0.718
POPTR_0013s10420
Populus trichocarpa
POPTR_0013s10420
I
0.699
POPTR_0019s10220
Populus trichocarpa
POPTR_0019s10220
I
0.684
SapurV1A.2173s0020
Salix purpurea
SapurV1A.2173s0020
I
0.684
SapurV1A.3847s0010
Salix purpurea
SapurV1A.3847s0010
I
0.711
SapurV1A.4200s0010
Salix purpurea
SapurV1A.4200s0010
I
0.711
scaffold_102587.1
Arabidopsis lyrata
scaffold_102587.1
I
0.838
TCM_036224
Theobroma cacao
TCM_036224
I
0.757
Thhalv10009842m.g
Eutrema salsugineum
Thhalv10009842m.g
I
0.844
Thhalv10019510m.g
Eutrema salsugineum
Thhalv10019510m.g
I
0.834