CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

29603.m000509 *(Ricinus communis)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	29603.m000509	T006700_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.811	0.750
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.786	0.750
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.778	0.712
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.778	0.712
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.778	0.731
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.778	0.731
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.778	0.731
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.766	0.788
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.760	0.750
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.760	0.750
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.754	0.750
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.754	0.750
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.754	0.750
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.745	0.750
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.728	0.692
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.723	0.712
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.723	0.712
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.723	0.712
ERF098 M01618_2.00	Arabidopsis thaliana	NNGCCGNC	GNCGGCNN	PBM Weirauch et al.(2014) pTH8259	0.723	0.750
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.719	0.615
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.712	0.712
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.711	0.635
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.710	0.692
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.710	0.692
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.710	0.692
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.710	0.692
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.710	0.692
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.709	0.712
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.708	0.654
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.708	0.673
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.707	0.654
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.707	0.654
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.707	0.712
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.707	0.712
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.707	0.712
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.703	0.635
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.703	0.635
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.701	0.712
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.701	0.712
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.697	0.692
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.697	0.692
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.695	0.615
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.695	0.692
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.695	0.692
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.694	0.654
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.693	0.654
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.693	0.654
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.691	0.596
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.690	0.673
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.689	0.731
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.684	0.654
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.682	0.673
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.682	0.673
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.682	0.673
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.682	0.673
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.681	0.654
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.681	0.654
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.679	0.692
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.679	0.692
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.678	0.635
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.678	0.654
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
29603.m000509	AP2	13	65	VRYRGVRRRPWGKFAAEIRDPSRHGTRLWLGTFDTAEEAARAYDRAAFHLRGH

Links
Other AP2 family TFs
Other *Ricinus communis* TFs

1898 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
29693.m002035	Ricinus communis	29693.m002035	N
AMTR_s00014p00061870	Amborella trichopoda	AMTR_s00014p00061870	N
Aquca_022_00160	Aquilegia coerulea	Aquca_022_00160	N
AT2G34450	Arabidopsis thaliana	AT2G34450	N
BGIOSGA004165	Oryza indica	BGIOSGA004165	N
BGIOSGA004167	Oryza indica	BGIOSGA004167	N
Bo4g182600	Brassica oleracea	Bo4g182600	N
Bostr.23794s0665	Boechera stricta	Bostr.23794s0665	N
Bra021911	Brassica rapa	Bra021911	N
BRADI2G45927	Brachypodium distachyon	BRADI2G45927	I
Cagra.7352s0006	Capsella grandiflora	Cagra.7352s0006	N
Carubv10024236m.g	Capsella rubella	Carubv10024236m.g	N
cassava6449.valid.m1	Manihot esculenta	cassava6449.valid.m1	N
cassava7606.valid.m1	Manihot esculenta	cassava7606.valid.m1	N
Ca_05162	Cicer arietinum	Ca_05162	N
Ca_05164	Cicer arietinum	Ca_05164	N
chr5.CM0180.220.nd	Lotus japonicus	chr5.CM0180.220.nd	I
Ciclev10017037m.g	Citrus clementina	Ciclev10017037m.g	N
Cucsa.047620	Cucumis sativus	Cucsa.047620	N
Eucgr.D00306	Eucalyptus grandis	Eucgr.D00306	N
F775_05073	Aegilops tauschii	F775_05073	I
fgenesh2_kg.4__1466__AT2G34450.2	Arabidopsis lyrata	fgenesh2_kg.4__1466__AT2G34450.2	N
gene18862-v1.0-hybrid	Fragaria vesca	gene18862-v1.0-hybrid	I
gene30574-v1.0-hybrid	Fragaria vesca	gene30574-v1.0-hybrid	N
GLYMA05G25900	Glycine max	GLYMA05G25900	N
GLYMA08G08840	Glycine max	GLYMA08G08840	N
Gorai.011G042300	Gossypium raimondii	Gorai.011G042300	N
GRMZM2G024247	Zea mays	GRMZM2G024247	N
GSMUA_Achr4G07950_001	Musa acuminata	GSMUA_Achr4G07950_001	N
GSMUA_Achr4G15000_001	Musa acuminata	GSMUA_Achr4G15000_001	N
GUITHDRAFT_114564	Guillardia theta	GUITHDRAFT_114564	N
GUITHDRAFT_76406	Guillardia theta	GUITHDRAFT_76406	N
HMGB5	Arabidopsis thaliana	AT4G35570	I
LPERR01G21970	Leersia perrieri	LPERR01G21970	N
Lus10015268.g	Linum usitatissimum	Lus10015268.g	N
Lus10025391.g	Linum usitatissimum	Lus10025391.g	N
MDP0000143506	Malus domestica	MDP0000143506	N
MDP0000170945	Malus domestica	MDP0000170945	N
MDP0000392251	Malus domestica	MDP0000392251	N
MDP0000695104	Malus domestica	MDP0000695104	N
mgf009922m	Mimulus guttatus	mgf009922m	N
MLOC_7069	Hordeum vulgare	MLOC_7069	N
MTR_4g094622	Medicago truncatula	MTR_4g094622	N
OB01G34910	Oryza brachyantha	OB01G34910	I
OBART01G25720	Oryza barthii	OBART01G25720	N
OGLUM01G29550	Oryza glumaepatula	OGLUM01G29550	N
orange1.1g031573m.g	Citrus sinensis	orange1.1g031573m.g	N
ORGLA01G0210300	Oryza glaberrima	ORGLA01G0210300	N
ORUFI01G28620	Oryza rufipogon	ORUFI01G28620	N
OS01G0666200	Oryza sativa	OS01G0666200	N
OSTLU_19125	Ostreococcus lucimarinus	OSTLU_19125	N
Pavir.Eb02691	Panicum virgatum	Pavir.Eb02691	I
Pavir.J05892	Panicum virgatum	Pavir.J05892	N
PK22924.1	Cannabis sativa	PK22924.1	N
POPTR_0004s13630	Populus trichocarpa	POPTR_0004s13630	N
PRUPE_ppa013152mg	Prunus persica	PRUPE_ppa013152mg	N
SapurV1A.0560s0060	Salix purpurea	SapurV1A.0560s0060	N
Sb03g030540	Sorghum bicolor	Sb03g030540	N
Si003021m.g	Setaria italica	Si003021m.g	N
TCM_029514	Theobroma cacao	TCM_029514	N
Thhalv10017360m.g	Eutrema salsugineum	Thhalv10017360m.g	N
TRAES3BF031900060CFD_g	Triticum aestivum	TRAES3BF031900060CFD_g	I

29603.m000509 (Ricinus communis) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1898 Related TFs

29603.m000509 **(Ricinus communis)
AP2**