Carubv10011955m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10011955m.g T007868_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF019
M01092_2.00 		Arabidopsis thaliana
CRCCGRCV
BGYCGGYG		 PBM
Lambert et al.(2019)
pTH11534 		0.848 1.000
ERF019
M06571_2.00 		Arabidopsis thaliana
HDYCACCGACAHNNN
NNNDTGTCGGTGRHD		 Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a 		0.848 1.000
ERF019
M06572_2.00 		Arabidopsis thaliana
DYCACCGHCRHHDYC
GRHDDYGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g22810_col 		0.848 1.000
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011955m AP2 11 62

Links

Other AP2 family TFs
Other Capsella rubella TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29938.m000611 Ricinus communis 29938.m000611 I 0.713
Bo2g072950 Brassica oleracea Bo2g072950 I 0.838
Bo5g038890 Brassica oleracea Bo5g038890 I 0.838
Bo6g113060 Brassica oleracea Bo6g113060 I 0.829
Bo7g057680 Brassica oleracea Bo7g057680 I 0.830
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.826
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.846
Bra007974 Brassica rapa Bra007974 I 0.838
Bra012345 Brassica rapa Bra012345 I 0.838
Bra016133 Brassica rapa Bra016133 I 0.806
Bra024539 Brassica rapa Bra024539 I 0.838
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.848
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.826
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.826
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.707
Ca_15055 Cicer arietinum Ca_15055 I 0.701
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.696
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.712
Cla012182 Citrullus lanatus Cla012182 I 0.703
ERF019 Arabidopsis thaliana AT1G22810 D 0.848
ERF020 Arabidopsis thaliana AT1G71520 I 0.826
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.749
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.686
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.818
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.694
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.692
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.701
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.700
mgf010891m Mimulus guttatus mgf010891m I 0.688
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.708
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.712
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.707
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.678
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.678
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.705
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.705
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.848
TCM_036224 Theobroma cacao TCM_036224 I 0.750
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.840
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.827