chr2.CM0018.340.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr2.CM0018.340.nd T010161_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF019
M01092_2.00 		Arabidopsis thaliana
CRCCGRCV
BGYCGGYG		 PBM
Lambert et al.(2019)
pTH11534 		0.696 0.740
ERF019
M06571_2.00 		Arabidopsis thaliana
HDYCACCGACAHNNN
NNNDTGTCGGTGRHD		 Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a 		0.696 0.740
ERF019
M06572_2.00 		Arabidopsis thaliana
DYCACCGHCRHHDYC
GRHDDYGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g22810_col 		0.696 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0018.340.nd AP2 14 65

Links

Other AP2 family TFs
Other Lotus japonicus TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29938.m000611 Ricinus communis 29938.m000611 I 0.771
Aquca_001_00483 Aquilegia coerulea Aquca_001_00483 N 0.699
Bo2g072950 Brassica oleracea Bo2g072950 I 0.702
Bo5g038890 Brassica oleracea Bo5g038890 I 0.709
Bo6g113060 Brassica oleracea Bo6g113060 I 0.715
Bo7g057680 Brassica oleracea Bo7g057680 I 0.701
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.709
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.695
Bra007974 Brassica rapa Bra007974 I 0.702
Bra012345 Brassica rapa Bra012345 I 0.709
Bra016133 Brassica rapa Bra016133 I 0.693
Bra024539 Brassica rapa Bra024539 I 0.709
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.696
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.709
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.696
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.709
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.765
cassava9593.m1 Manihot esculenta cassava9593.m1 N 0.699
Ca_15055 Cicer arietinum Ca_15055 I 0.814
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.800
Cla012182 Citrullus lanatus Cla012182 I 0.775
Cucsa.088640 Cucumis sativus Cucsa.088640 N 0.734
ERF019 Arabidopsis thaliana AT1G22810 D 0.696
ERF020 Arabidopsis thaliana AT1G71520 I 0.709
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.701
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.738
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.702
gene27062-v1.0-hybrid Fragaria vesca gene27062-v1.0-hybrid N 0.697
GLYMA01G44230 Glycine max GLYMA01G44230 N 0.732
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.805
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.763
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.736
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.757
MDP0000932292 Malus domestica MDP0000932292 N 0.690
mgf010891m Mimulus guttatus mgf010891m I 0.748
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.809
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.800
PGSC0003DMG400008734 Solanum tuberosum PGSC0003DMG400008734 N 0.743
Pm004265 Prunus mume Pm004265 N 0.683
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.764
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.748
PRUPE_ppa020605mg Prunus persica PRUPE_ppa020605mg N 0.683
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.749
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.776
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.776
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.696
Solyc01g057080.1 Solanum lycopersicum Solyc01g057080.1 N 0.722
TCM_036224 Theobroma cacao TCM_036224 I 0.695
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.702
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.714
TRAES3BF106000020CFD_g Triticum aestivum TRAES3BF106000020CFD_g N 0.680