ENSCING00000013307 (Ciona intestinalis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSCING00000013307 T014470_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.524 0.535
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.524 0.535
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.494 0.581
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.494 0.581
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.494 0.581
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.494 0.581
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.484 0.581
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.476 0.547
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000024499 ARID/BRIGHT 34 120

Links

Other ARID/BRIGHT family TFs
Other Ciona intestinalis TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29648.m001919 Ricinus communis 29648.m001919 N
AMTR_s00186p00018500 Amborella trichopoda AMTR_s00186p00018500 N
Aquca_014_00370 Aquilegia coerulea Aquca_014_00370 N
Bo5g034360 Brassica oleracea Bo5g034360 N
Bra017915 Brassica rapa Bra017915 N
BRADI2G56910 Brachypodium distachyon BRADI2G56910 N
Cagra.1632s0036 Capsella grandiflora Cagra.1632s0036 N
Carubv10008658m.g Capsella rubella Carubv10008658m.g N
cassava26784.m1 Manihot esculenta cassava26784.m1 N
cassava42388.valid.m1 Manihot esculenta cassava42388.valid.m1 N
Ca_03920 Cicer arietinum Ca_03920 N
chr1.CM0982.460.nd Lotus japonicus chr1.CM0982.460.nd N
Ciclev10000671m.g Citrus clementina Ciclev10000671m.g N
Cla015267 Citrullus lanatus Cla015267 N
Cucsa.079150 Cucumis sativus Cucsa.079150 N
Eucgr.F04276 Eucalyptus grandis Eucgr.F04276 N
evm.TU.supercontig_26.96 Carica papaya evm.TU.supercontig_26.96 N
F775_25916 Aegilops tauschii F775_25916 N
gene01015-v1.0-hybrid Fragaria vesca gene01015-v1.0-hybrid N
GLYMA04G42090 Glycine max GLYMA04G42090 N
GLYMA06G12701 Glycine max GLYMA06G12701 N
GLYMA13G09220 Glycine max GLYMA13G09220 N
GLYMA14G27290 Glycine max GLYMA14G27290 N
Gorai.005G083700 Gossypium raimondii Gorai.005G083700 N
Gorai.009G251800 Gossypium raimondii Gorai.009G251800 N
GSMUA_Achr10G17290_001 Musa acuminata GSMUA_Achr10G17290_001 N
GSMUA_Achr3G02410_001 Musa acuminata GSMUA_Achr3G02410_001 N
GSMUA_Achr6G11780_001 Musa acuminata GSMUA_Achr6G11780_001 N
LPERR01G33950 Leersia perrieri LPERR01G33950 N
Lus10029747.g Linum usitatissimum Lus10029747.g N
Lus10042776.g Linum usitatissimum Lus10042776.g N
MDP0000727836 Malus domestica MDP0000727836 N
MDP0000859087 Malus domestica MDP0000859087 N
mgf010500m Mimulus guttatus mgf010500m N
MLOC_6971 Hordeum vulgare MLOC_6971 N
MTR_1g029420 Medicago truncatula MTR_1g029420 N
MTR_3g089055 Medicago truncatula MTR_3g089055 N
OB01G48180 Oryza brachyantha OB01G48180 N
OBART01G39420 Oryza barthii OBART01G39420 N
OGLUM01G43650 Oryza glumaepatula OGLUM01G43650 N
OLONG_003002 Oryza longistaminata OLONG_003002 N
OMERI01G36330 Oryza meridionalis OMERI01G36330 N
ONIVA01G44280 Oryza nivara ONIVA01G44280 N
OPUNC01G38160 Oryza punctata OPUNC01G38160 N
orange1.1g007853m.g Citrus sinensis orange1.1g007853m.g N
ORGLA01G0333300 Oryza glaberrima ORGLA01G0333300 N
ORUFI01G42800 Oryza rufipogon ORUFI01G42800 N
OS01G0881500 Oryza sativa OS01G0881500 N
Pavir.Ea03635 Panicum virgatum Pavir.Ea03635 N
Pavir.J20385 Panicum virgatum Pavir.J20385 N
Pavir.J36240 Panicum virgatum Pavir.J36240 N
PDK_20s1392371g003 Phoenix dactylifera PDK_20s1392371g003 N
PGSC0003DMG400024853 Solanum tuberosum PGSC0003DMG400024853 N
PK29476.1 Cannabis sativa PK29476.1 N
Pm022704 Prunus mume Pm022704 N
POPTR_0002s07430 Populus trichocarpa POPTR_0002s07430 N
POPTR_0005s20890 Populus trichocarpa POPTR_0005s20890 N
PRUPE_ppa003310mg Prunus persica PRUPE_ppa003310mg N
SapurV1A.0261s0120 Salix purpurea SapurV1A.0261s0120 N
SapurV1A.0267s0240 Salix purpurea SapurV1A.0267s0240 N
Sb03g041760 Sorghum bicolor Sb03g041760 N
Sb09g020850 Sorghum bicolor Sb09g020850 N
SCL1 Arabidopsis thaliana AT1G21450 N
SCL1 Vitis vinifera VIT_18s0001g15270 N
SCL1 Arabidopsis lyrata fgenesh2_kg.1__2335__AT1G21450.1 N
Si000832m.g Setaria italica Si000832m.g N
Si021635m.g Setaria italica Si021635m.g N
Solyc04g064550.1 Solanum lycopersicum Solyc04g064550.1 N
TCM_035362 Theobroma cacao TCM_035362 N
Thhalv10007142m.g Eutrema salsugineum Thhalv10007142m.g N
TRAES3BF021600230CFD_g Triticum aestivum TRAES3BF021600230CFD_g N
Traes_3AL_6E16C8167 Triticum aestivum Traes_3AL_6E16C8167 N
Traes_3DL_BF7D83705 Triticum aestivum Traes_3DL_BF7D83705 N
TRIUR3_26381 Triticum urartu TRIUR3_26381 N
VIT_04s0044g01370 Vitis vinifera VIT_04s0044g01370 N