Carubv10014420m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10014420m.g T022867_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014420m B3 125 216

Links

Other B3 family TFs
Other Capsella rubella TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00076p00157170 Amborella trichopoda AMTR_s00076p00157170 I 0.000
AMTR_s00133p00071910 Amborella trichopoda AMTR_s00133p00071910 I 0.000
Aquca_001_00247 Aquilegia coerulea Aquca_001_00247 I 0.000
Aquca_025_00152 Aquilegia coerulea Aquca_025_00152 N 0.000
Aquca_062_00019 Aquilegia coerulea Aquca_062_00019 I 0.000
Aquca_068_00041 Aquilegia coerulea Aquca_068_00041 I 0.000
ATMYB35 Populus trichocarpa POPTR_0017s11140 N 0.000
ATMYB35 Vitis vinifera VIT_14s0066g02180 N 0.000
ATMYB68 Arabidopsis thaliana AT5G65790 I 0.000
ATMYB68 Arabidopsis lyrata fgenesh2_kg.8__2632__AT5G65790.1 I 0.000
BGIOSGA009166 Oryza indica BGIOSGA009166 I 0.000
BGIOSGA009746 Oryza indica BGIOSGA009746 I 0.000
BGIOSGA010923 Oryza indica BGIOSGA010923 I 0.000
Bo2g030240 Brassica oleracea Bo2g030240 I 0.000
Bo2g168190 Brassica oleracea Bo2g168190 I 0.000
Bo3g019230 Brassica oleracea Bo3g019230 I 0.000
Bo3g097710 Brassica oleracea Bo3g097710 I 0.000
Bo8g078940 Brassica oleracea Bo8g078940 I 0.000
Bo9g018910 Brassica oleracea Bo9g018910 I 0.000
Bo9g133340 Brassica oleracea Bo9g133340 I 0.000
Bostr.0568s0206 Boechera stricta Bostr.0568s0206 I 0.000
Bostr.26833s0495 Boechera stricta Bostr.26833s0495 I 0.000
Bra006811 Brassica rapa Bra006811 I 0.000
Bra017963 Brassica rapa Bra017963 I 0.000
Bra020428 Brassica rapa Bra020428 I 0.000
Bra024419 Brassica rapa Bra024419 I 0.000
Bra031847 Brassica rapa Bra031847 I 0.000
Bra037828 Brassica rapa Bra037828 I 0.000
BRADI4G38965 Brachypodium distachyon BRADI4G38965 I 0.000
Cagra.0917s0007 Capsella grandiflora Cagra.0917s0007 I 0.000
Cagra.1838s0012 Capsella grandiflora Cagra.1838s0012 I 0.000
Cagra.2848s0043 Capsella grandiflora Cagra.2848s0043 I 0.000
Carubv10018748m.g Capsella rubella Carubv10018748m.g I 0.000
Carubv10026749m.g Capsella rubella Carubv10026749m.g I 0.000
Carubv10027655m.g Capsella rubella Carubv10027655m.g I 0.000
cassava11642.m1 Manihot esculenta cassava11642.m1 I 0.000
cassava22399.valid.m1 Manihot esculenta cassava22399.valid.m1 I 0.000
cassava25562.m1 Manihot esculenta cassava25562.m1 I 0.000
cassava26004.m1 Manihot esculenta cassava26004.m1 I 0.000
cassava26191.m1 Manihot esculenta cassava26191.m1 N 0.000
cassava26711.m1 Manihot esculenta cassava26711.m1 I 0.000
cassava27131.m1 Manihot esculenta cassava27131.m1 I 0.000
cassava27944.m1 Manihot esculenta cassava27944.m1 N 0.000
cassava28503.m1 Manihot esculenta cassava28503.m1 I 0.000
cassava34548.m1 Manihot esculenta cassava34548.m1 I 0.000
cassava41279.m1 Manihot esculenta cassava41279.m1 N 0.000
cassava46793.m1 Manihot esculenta cassava46793.m1 I 0.000
Ca_02249 Cicer arietinum Ca_02249 I 0.000
Ca_09203 Cicer arietinum Ca_09203 I 0.000
Ca_10555 Cicer arietinum Ca_10555 N 0.000
Ciclev10010364m.g Citrus clementina Ciclev10010364m.g I 0.000
Ciclev10010621m.g Citrus clementina Ciclev10010621m.g I 0.000
Ciclev10012151m.g Citrus clementina Ciclev10012151m.g I 0.000
Ciclev10013340m.g Citrus clementina Ciclev10013340m.g I 0.000
Ciclev10023930m.g Citrus clementina Ciclev10023930m.g N 0.000
Ciclev10027178m.g Citrus clementina Ciclev10027178m.g I 0.000
Ciclev10028804m.g Citrus clementina Ciclev10028804m.g I 0.000
Cla008857 Citrullus lanatus Cla008857 I 0.000
Cla014272 Citrullus lanatus Cla014272 I 0.000
Cla018072 Citrullus lanatus Cla018072 I 0.000
Cla019436 Citrullus lanatus Cla019436 N 0.000
Cla021213 Citrullus lanatus Cla021213 I 0.000
Cla023198 Citrullus lanatus Cla023198 I 0.000
Cucsa.103470 Cucumis sativus Cucsa.103470 I 0.000
Cucsa.197410 Cucumis sativus Cucsa.197410 N 0.000
Cucsa.306690 Cucumis sativus Cucsa.306690 I 0.000
Cucsa.339230 Cucumis sativus Cucsa.339230 N 0.000
Cucsa.353120 Cucumis sativus Cucsa.353120 I 0.000
Cucsa.395340 Cucumis sativus Cucsa.395340 I 0.000
Eucgr.C02280 Eucalyptus grandis Eucgr.C02280 I 0.000
Eucgr.C02391 Eucalyptus grandis Eucgr.C02391 I 0.000
Eucgr.F02207 Eucalyptus grandis Eucgr.F02207 I 0.000
Eucgr.I02017 Eucalyptus grandis Eucgr.I02017 I 0.000
evm.TU.contig_28309.2 Carica papaya evm.TU.contig_28309.2 I 0.000
evm.TU.supercontig_102.29 Carica papaya evm.TU.supercontig_102.29 I 0.000
evm.TU.supercontig_65.37 Carica papaya evm.TU.supercontig_65.37 I 0.000
evm.TU.supercontig_95.69 Carica papaya evm.TU.supercontig_95.69 I 0.000
e_gw1.204.95.1 Physcomitrella patens e_gw1.204.95.1 N 0.000
F775_02630 Aegilops tauschii F775_02630 I 0.000
F775_14388 Aegilops tauschii F775_14388 I 0.000
F775_22184 Aegilops tauschii F775_22184 I 0.000
gene02643-v1.0-hybrid Fragaria vesca gene02643-v1.0-hybrid I 0.000
gene05581-v1.0-hybrid Fragaria vesca gene05581-v1.0-hybrid I 0.000
gene09663-v1.0-hybrid Fragaria vesca gene09663-v1.0-hybrid I 0.000
gene28902-v1.0-hybrid Fragaria vesca gene28902-v1.0-hybrid I 0.000
GLYMA0041S00310 Glycine max GLYMA0041S00310 I 0.000
GLYMA01G40411 Glycine max GLYMA01G40411 I 0.000
GLYMA04G05170 Glycine max GLYMA04G05170 I 0.000
GLYMA06G05260 Glycine max GLYMA06G05260 I 0.000
GLYMA10G06190 Glycine max GLYMA10G06190 I 0.000
GLYMA11G04880 Glycine max GLYMA11G04880 I 0.000
GLYMA13G04920 Glycine max GLYMA13G04920 I 0.000
GLYMA13G20510 Glycine max GLYMA13G20510 I 0.000
GLYMA14G10340 Glycine max GLYMA14G10340 I 0.000
GLYMA19G02090 Glycine max GLYMA19G02090 I 0.000
GLYMA19G36830 Glycine max GLYMA19G36830 I 0.000
Gorai.004G231100 Gossypium raimondii Gorai.004G231100 I 0.000
Gorai.006G162800 Gossypium raimondii Gorai.006G162800 I 0.000
Gorai.007G227500 Gossypium raimondii Gorai.007G227500 I 0.000
Gorai.008G086400 Gossypium raimondii Gorai.008G086400 I 0.000
Gorai.009G006700 Gossypium raimondii Gorai.009G006700 I 0.000
Gorai.009G110800 Gossypium raimondii Gorai.009G110800 I 0.000
Gorai.010G028800 Gossypium raimondii Gorai.010G028800 I 0.000
Gorai.010G139300 Gossypium raimondii Gorai.010G139300 N 0.000
Gorai.013G246200 Gossypium raimondii Gorai.013G246200 I 0.000
Gorai.013G269300 Gossypium raimondii Gorai.013G269300 I 0.000
GRMZM2G015021 Zea mays GRMZM2G015021 I 0.000
GRMZM2G090837 Zea mays GRMZM2G090837 I 0.000
GRMZM2G104789 Zea mays GRMZM2G104789 I 0.000
GRMZM2G308034 Zea mays GRMZM2G308034 I 0.000
GSMUA_Achr3G10060_001 Musa acuminata GSMUA_Achr3G10060_001 I 0.000
GSMUA_Achr4G28090_001 Musa acuminata GSMUA_Achr4G28090_001 I 0.000
GSMUA_Achr5G01930_001 Musa acuminata GSMUA_Achr5G01930_001 I 0.000
GSMUA_Achr5G09280_001 Musa acuminata GSMUA_Achr5G09280_001 I 0.000
GSMUA_Achr5G22760_001 Musa acuminata GSMUA_Achr5G22760_001 I 0.000
GSMUA_Achr6G01850_001 Musa acuminata GSMUA_Achr6G01850_001 I 0.000
GSMUA_Achr7G19530_001 Musa acuminata GSMUA_Achr7G19530_001 I 0.000
GSMUA_Achr8G24780_001 Musa acuminata GSMUA_Achr8G24780_001 I 0.000
GSMUA_Achr9G09790_001 Musa acuminata GSMUA_Achr9G09790_001 I 0.000
LjSGA_044047.1 Lotus japonicus LjSGA_044047.1 I 0.000
LjT05A08.60.nd Lotus japonicus LjT05A08.60.nd I 0.000
LPERR02G28940 Leersia perrieri LPERR02G28940 I 0.000
LPERR03G12200 Leersia perrieri LPERR03G12200 I 0.000
LPERR03G29970 Leersia perrieri LPERR03G29970 I 0.000
Lus10001316.g Linum usitatissimum Lus10001316.g I 0.000
Lus10001394.g Linum usitatissimum Lus10001394.g I 0.000
Lus10005834.g Linum usitatissimum Lus10005834.g N 0.000
Lus10006978.g Linum usitatissimum Lus10006978.g I 0.000
Lus10007248.g Linum usitatissimum Lus10007248.g I 0.000
Lus10011606.g Linum usitatissimum Lus10011606.g I 0.000
Lus10013830.g Linum usitatissimum Lus10013830.g I 0.000
Lus10016139.g Linum usitatissimum Lus10016139.g I 0.000
Lus10021428.g Linum usitatissimum Lus10021428.g I 0.000
Lus10026543.g Linum usitatissimum Lus10026543.g I 0.000
Lus10028248.g Linum usitatissimum Lus10028248.g I 0.000
Lus10039462.g Linum usitatissimum Lus10039462.g N 0.000
MDP0000229498 Malus domestica MDP0000229498 I 0.000
MDP0000245436 Malus domestica MDP0000245436 I 0.000
MDP0000258046 Malus domestica MDP0000258046 N 0.000
MDP0000587648 Malus domestica MDP0000587648 I 0.000
mgf002711m Mimulus guttatus mgf002711m I 0.000
mgf012871m Mimulus guttatus mgf012871m I 0.000
mgf017404m Mimulus guttatus mgf017404m I 0.000
mgf021409m Mimulus guttatus mgf021409m I 0.000
mgf021784m Mimulus guttatus mgf021784m I 0.000
mgf024894m Mimulus guttatus mgf024894m I 0.000
MLOC_44167 Hordeum vulgare MLOC_44167 I 0.000
MLOC_5098 Hordeum vulgare MLOC_5098 I 0.000
MLOC_58499 Hordeum vulgare MLOC_58499 I 0.000
MTR_1g017140 Medicago truncatula MTR_1g017140 I 0.000
MTR_2g095520 Medicago truncatula MTR_2g095520 I 0.000
MTR_3g103570 Medicago truncatula MTR_3g103570 I 0.000
MTR_5g014990 Medicago truncatula MTR_5g014990 I 0.000
MTR_6g009430 Medicago truncatula MTR_6g009430 N 0.000
MYB36 Arabidopsis thaliana AT5G57620 I 0.000
MYB36 Arabidopsis lyrata scaffold_802340.1 I 0.000
MYB36 Vitis vinifera VIT_11s0052g01490 I 0.000
O49746_ARATH Arabidopsis thaliana O49746_ARATH I 0.000
OB02G41990 Oryza brachyantha OB02G41990 I 0.000
OB03G23760 Oryza brachyantha OB03G23760 I 0.000
OB03G42660 Oryza brachyantha OB03G42660 I 0.000
OB05G32650 Oryza brachyantha OB05G32650 I 0.000
OBART02G35180 Oryza barthii OBART02G35180 I 0.000
OBART03G13840 Oryza barthii OBART03G13840 I 0.000
OBART03G35660 Oryza barthii OBART03G35660 I 0.000
OGLUM02G36330 Oryza glumaepatula OGLUM02G36330 I 0.000
OGLUM03G13980 Oryza glumaepatula OGLUM03G13980 I 0.000
OGLUM03G35410 Oryza glumaepatula OGLUM03G35410 I 0.000
OLONG_007639 Oryza longistaminata OLONG_007639 I 0.000
OLONG_025560 Oryza longistaminata OLONG_025560 I 0.000
OMERI03G12640 Oryza meridionalis OMERI03G12640 I 0.000
OMERI03G32880 Oryza meridionalis OMERI03G32880 I 0.000
ONIVA02G37300 Oryza nivara ONIVA02G37300 I 0.000
ONIVA03G15100 Oryza nivara ONIVA03G15100 I 0.000
ONIVA03G37150 Oryza nivara ONIVA03G37150 I 0.000
OPUNC02G32390 Oryza punctata OPUNC02G32390 I 0.000
OPUNC03G13320 Oryza punctata OPUNC03G13320 I 0.000
OPUNC12G18070 Oryza punctata OPUNC12G18070 I 0.000
orange1.1g017727m.g Citrus sinensis orange1.1g017727m.g I 0.000
orange1.1g019787m.g Citrus sinensis orange1.1g019787m.g I 0.000
orange1.1g020997m.g Citrus sinensis orange1.1g020997m.g I 0.000
orange1.1g036344m.g Citrus sinensis orange1.1g036344m.g I 0.000
orange1.1g043557m.g Citrus sinensis orange1.1g043557m.g I 0.000
orange1.1g045583m.g Citrus sinensis orange1.1g045583m.g I 0.000
ORGLA02G0304700 Oryza glaberrima ORGLA02G0304700 I 0.000
ORGLA03G0133600 Oryza glaberrima ORGLA03G0133600 I 0.000
ORGLA03G0327000 Oryza glaberrima ORGLA03G0327000 I 0.000
ORUFI02G36680 Oryza rufipogon ORUFI02G36680 I 0.000
ORUFI03G14500 Oryza rufipogon ORUFI03G14500 I 0.000
ORUFI03G37090 Oryza rufipogon ORUFI03G37090 I 0.000
OS02G0786400 Oryza sativa OS02G0786400 I 0.000
OS03G0771100 Oryza sativa OS03G0771100 I 0.000
Pavir.Aa00264 Panicum virgatum Pavir.Aa00264 I 0.000
Pavir.Ab03119 Panicum virgatum Pavir.Ab03119 I 0.000
Pavir.Ba03178 Panicum virgatum Pavir.Ba03178 I 0.000
Pavir.Bb01783 Panicum virgatum Pavir.Bb01783 I 0.000
Pavir.Db01456 Panicum virgatum Pavir.Db01456 I 0.000
Pavir.Ia00427 Panicum virgatum Pavir.Ia00427 I 0.000
PDK_20s1379331g001 Phoenix dactylifera PDK_20s1379331g001 I 0.000
PGSC0003DMG400002013 Solanum tuberosum PGSC0003DMG400002013 I 0.000
PGSC0003DMG400003890 Solanum tuberosum PGSC0003DMG400003890 I 0.000
PGSC0003DMG400004948 Solanum tuberosum PGSC0003DMG400004948 I 0.000
PGSC0003DMG400008532 Solanum tuberosum PGSC0003DMG400008532 I 0.000
PK05741.1 Cannabis sativa PK05741.1 I 0.000
PK14382.1 Cannabis sativa PK14382.1 I 0.000
PK16424.1 Cannabis sativa PK16424.1 I 0.000
PK26008.1 Cannabis sativa PK26008.1 I 0.000
Pm001105 Prunus mume Pm001105 I 0.000
Pm026353 Prunus mume Pm026353 I 0.000
POPTR_0002s11440 Populus trichocarpa POPTR_0002s11440 I 0.000
POPTR_0004s22490 Populus trichocarpa POPTR_0004s22490 I 0.000
POPTR_0006s12530 Populus trichocarpa POPTR_0006s12530 I 0.000
POPTR_0009s01270 Populus trichocarpa POPTR_0009s01270 I 0.000
POPTR_0012s07450 Populus trichocarpa POPTR_0012s07450 N 0.000
POPTR_0015s07900 Populus trichocarpa POPTR_0015s07900 N 0.000
POPTR_0018s10390 Populus trichocarpa POPTR_0018s10390 I 0.000
PRUPE_ppa007823mg Prunus persica PRUPE_ppa007823mg I 0.000
PRUPE_ppa008732mg Prunus persica PRUPE_ppa008732mg I 0.000
PRUPE_ppa026975mg Prunus persica PRUPE_ppa026975mg I 0.000
RAX3 Arabidopsis lyrata Al_scaffold_0005_1808 I 0.000
RAX3 Arabidopsis thaliana AT3G49690 D 0.000
SapurV1A.0004s0360 Salix purpurea SapurV1A.0004s0360 I 0.000
SapurV1A.0049s0100 Salix purpurea SapurV1A.0049s0100 I 0.000
SapurV1A.0161s0110 Salix purpurea SapurV1A.0161s0110 N 0.000
SapurV1A.0271s0250 Salix purpurea SapurV1A.0271s0250 I 0.000
SapurV1A.0589s0050 Salix purpurea SapurV1A.0589s0050 I 0.000
SapurV1A.0818s0020 Salix purpurea SapurV1A.0818s0020 I 0.000
SapurV1A.1048s0030 Salix purpurea SapurV1A.1048s0030 I 0.000
SapurV1A.1188s0040 Salix purpurea SapurV1A.1188s0040 I 0.000
Sb01g006800 Sorghum bicolor Sb01g006800 I 0.000
Sb01g038250 Sorghum bicolor Sb01g038250 I 0.000
Sb02g012860 Sorghum bicolor Sb02g012860 I 0.000
Si017415m.g Setaria italica Si017415m.g I 0.000
Si030544m.g Setaria italica Si030544m.g I 0.000
Si036681m.g Setaria italica Si036681m.g I 0.000
Solyc03g059200.1 Solanum lycopersicum Solyc03g059200.1 I 0.000
Solyc04g077260.2 Solanum lycopersicum Solyc04g077260.2 I 0.000
Solyc09g008250.2 Solanum lycopersicum Solyc09g008250.2 I 0.000
TCM_000861 Theobroma cacao TCM_000861 I 0.000
TCM_034634 Theobroma cacao TCM_034634 I 0.000
TCM_038898 Theobroma cacao TCM_038898 I 0.000
TCM_042012 Theobroma cacao TCM_042012 I 0.000
TCM_045715 Theobroma cacao TCM_045715 N 0.000
Thhalv10005299m.g Eutrema salsugineum Thhalv10005299m.g I 0.000
Thhalv10015689m.g Eutrema salsugineum Thhalv10015689m.g I 0.000
Thhalv10017791m.g Eutrema salsugineum Thhalv10017791m.g I 0.000
Traes_4AS_4EFBA88E4 Triticum aestivum Traes_4AS_4EFBA88E4 I 0.000
Traes_4BL_532725AD5 Triticum aestivum Traes_4BL_532725AD5 I 0.000
Traes_5BL_C1D4586B1 Triticum aestivum Traes_5BL_C1D4586B1 I 0.000
Traes_6AL_FF1508B19 Triticum aestivum Traes_6AL_FF1508B19 I 0.000
Traes_6BL_7755E4A8A Triticum aestivum Traes_6BL_7755E4A8A I 0.000
Traes_6DL_29EF04226 Triticum aestivum Traes_6DL_29EF04226 I 0.000
Traes_7AL_5B57EF9FC Triticum aestivum Traes_7AL_5B57EF9FC I 0.000
Traes_7DL_20EC9096A Triticum aestivum Traes_7DL_20EC9096A I 0.000
TRIUR3_13802 Triticum urartu TRIUR3_13802 I 0.000
VIT_00s1352g00010 Vitis vinifera VIT_00s1352g00010 I 0.000
VIT_06s0061g00470 Vitis vinifera VIT_06s0061g00470 I 0.000
VIT_17s0000g05400 Vitis vinifera VIT_17s0000g05400 I 0.000
VIT_18s0001g08470 Vitis vinifera VIT_18s0001g08470 I 0.000