ZNF550 (Macaca mulatta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMMUG00000006122 T099212_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF550
M07772_2.00 		Homo sapiens
TGCCYTAGCMBWSRYTYY
RRARYSWVKGCTARGGCA		 ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF550.RCADE.OriginalMapping 		0.827 0.995
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000008048 C2H2 ZF 157 179
ENSMMUP00000008048 C2H2 ZF 185 207
ENSMMUP00000008048 C2H2 ZF 213 235
ENSMMUP00000008048 C2H2 ZF 241 263
ENSMMUP00000008048 C2H2 ZF 269 291
ENSMMUP00000008048 C2H2 ZF 297 319
ENSMMUP00000008048 C2H2 ZF 325 347
ENSMMUP00000008048 C2H2 ZF 353 375
ENSMMUP00000031401 C2H2 ZF 198 220
ENSMMUP00000031401 C2H2 ZF 226 248
ENSMMUP00000031401 C2H2 ZF 254 276
ENSMMUP00000031401 C2H2 ZF 282 304
ENSMMUP00000031401 C2H2 ZF 310 332
ENSMMUP00000031401 C2H2 ZF 338 360
ENSMMUP00000031401 C2H2 ZF 366 388
ENSMMUP00000031401 C2H2 ZF 394 416

Links

Other C2H2 ZF family TFs
Other Macaca mulatta TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m011218 Ricinus communis 30190.m011218 N
AMTR_s00009p00253500 Amborella trichopoda AMTR_s00009p00253500 N
Aquca_038_00045 Aquilegia coerulea Aquca_038_00045 N
AT1G63490 Arabidopsis thaliana AT1G63490 N
BGIOSGA020494 Oryza indica BGIOSGA020494 N
Bo9g029100 Brassica oleracea Bo9g029100 N
Bostr.9600s0015 Boechera stricta Bostr.9600s0015 N
BRADI1G29247 Brachypodium distachyon BRADI1G29247 N
Cagra.2104s0024 Capsella grandiflora Cagra.2104s0024 N
cassava14944.m1 Manihot esculenta cassava14944.m1 N
chr2.CM0304.950.nc Lotus japonicus chr2.CM0304.950.nc N
Cla007529 Citrullus lanatus Cla007529 I
Eucgr.D01851 Eucalyptus grandis Eucgr.D01851 N
gene32474-v1.0-hybrid Fragaria vesca gene32474-v1.0-hybrid N
GLYMA01G42890 Glycine max GLYMA01G42890 N
GLYMA11G02580 Glycine max GLYMA11G02580 N
Gorai.004G211700 Gossypium raimondii Gorai.004G211700 N
GRMZM2G466292 Zea mays GRMZM2G466292 N
LPERR06G23820 Leersia perrieri LPERR06G23820 N
Lus10008495.g Linum usitatissimum Lus10008495.g N
MDP0000158904 Malus domestica MDP0000158904 N
MDP0000162827 Malus domestica MDP0000162827 N
MDP0000286412 Malus domestica MDP0000286412 N
MDP0000287313 Malus domestica MDP0000287313 N
mgf018831m Mimulus guttatus mgf018831m N
MTR_5g010300 Medicago truncatula MTR_5g010300 N
OBART06G28370 Oryza barthii OBART06G28370 N
OGLUM06G29760 Oryza glumaepatula OGLUM06G29760 N
OLONG_013925 Oryza longistaminata OLONG_013925 N
OMERI06G28260 Oryza meridionalis OMERI06G28260 N
ONIVA06G31490 Oryza nivara ONIVA06G31490 N
orange1.1g000212m.g Citrus sinensis orange1.1g000212m.g N
ORGLA06G0289500 Oryza glaberrima ORGLA06G0289500 N
ORUFI06G30290 Oryza rufipogon ORUFI06G30290 N
OS06G0731600 Oryza sativa OS06G0731600 N
PDK_20s1401711g002 Phoenix dactylifera PDK_20s1401711g002 N
PK05702.1 Cannabis sativa PK05702.1 N
Pm023825 Prunus mume Pm023825 N
Sb10g031260 Sorghum bicolor Sb10g031260 N
scaffold_200168.1 Arabidopsis lyrata scaffold_200168.1 N
Si005667m.g Setaria italica Si005667m.g N
Solyc08g081000.2 Solanum lycopersicum Solyc08g081000.2 N
TCM_016246 Theobroma cacao TCM_016246 N
Thhalv10023217m.g Eutrema salsugineum Thhalv10023217m.g N