GLYMA06G04840 (Glycine max)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 GLYMA06G04840 T118349_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.822 0.891
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.913
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.696
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.826
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.826
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.826
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA06G04840.1 C2H2 ZF 94 116
GLYMA06G04840.1 C2H2 ZF 143 165

Links

Other C2H2 ZF family TFs
Other Glycine max TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29780.m001393 Ricinus communis 29780.m001393 N 0.000
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 0.000
cassava18077.valid.m1 Manihot esculenta cassava18077.valid.m1 N 0.000
cassava18078.valid.m1 Manihot esculenta cassava18078.valid.m1 N 0.000
cassava39873.m1 Manihot esculenta cassava39873.m1 N 0.000
chr4.CM0387.290.nc Lotus japonicus chr4.CM0387.290.nc N 0.000
Ciclev10015354m.g Citrus clementina Ciclev10015354m.g N 0.000
Cla005911 Citrullus lanatus Cla005911 N 0.000
Eucgr.G02067 Eucalyptus grandis Eucgr.G02067 N 0.000
evm.TU.supercontig_2.121 Carica papaya evm.TU.supercontig_2.121 N 0.000
gene00620-v1.0-hybrid Fragaria vesca gene00620-v1.0-hybrid N 0.000
GLYMA05G26790 Glycine max GLYMA05G26790 N 0.000
GLYMA08G09780 Glycine max GLYMA08G09780 N 0.000
Gorai.002G171200 Gossypium raimondii Gorai.002G171200 N 0.000
MDP0000320521 Malus domestica MDP0000320521 N 0.000
MDP0000826219 Malus domestica MDP0000826219 N 0.000
OMERI10G00680 Oryza meridionalis OMERI10G00680 I 0.000
orange1.1g022806m.g Citrus sinensis orange1.1g022806m.g N 0.000
PK28293.1 Cannabis sativa PK28293.1 N 0.000
Pm005924 Prunus mume Pm005924 N 0.000
POPTR_0010s11180 Populus trichocarpa POPTR_0010s11180 N 0.000
PRUPE_ppa009765mg Prunus persica PRUPE_ppa009765mg N 0.000
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 0.000
SapurV1A.0015s0840 Salix purpurea SapurV1A.0015s0840 N 0.000
SapurV1A.0055s0040 Salix purpurea SapurV1A.0055s0040 N 0.000
TCM_011212 Theobroma cacao TCM_011212 N 0.000
Traes_4BL_011308A76 Triticum aestivum Traes_4BL_011308A76 I 0.000
VIT_17s0000g01860 Vitis vinifera VIT_17s0000g01860 N 0.000