estExt_Genewise1.C_110425 (Cochliobolus heterostrophus C5)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 estExt_Genewise1.C_110425 T138840_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU03975
M01879_2.00 		Neurospora crassa
NNRCWYDDNN
NNHHRWGYNN		 PBM
Weirauch et al.(2014)
pTH9677 		0.812 0.946
HCBG_04116
M01448_2.00 		Histoplasma capsulatum
RHCHGWGCDB
VHGCWCDGDY		 PBM
Najafabadi et al.(2015a)
pTH11149 		0.807 0.946
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_110425 C2H2 ZF 63 85
estExt_Genewise1.C_110425 C2H2 ZF 91 115
estExt_Genewise1.C_110425 C2H2 ZF 121 143
estExt_Genewise1.C_110425 C2H2 ZF 149 173

Links

Other C2H2 ZF family TFs
Other Cochliobolus heterostrophus C5 TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g160170 Brassica oleracea Bo9g160170 I 0.000
Bostr.19046s0061 Boechera stricta Bostr.19046s0061 I 0.000
Bostr.26527s0463 Boechera stricta Bostr.26527s0463 I 0.000
Bra013973 Brassica rapa Bra013973 I 0.000
Cagra.2098s0043 Capsella grandiflora Cagra.2098s0043 I 0.000
Cagra.6170s0019 Capsella grandiflora Cagra.6170s0019 I 0.000
Carubv10003592m.g Capsella rubella Carubv10003592m.g I 0.000
Carubv10015212m.g Capsella rubella Carubv10015212m.g I 0.000
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.000
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.000
Pm014329 Prunus mume Pm014329 I 0.000
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.000
RGL2 Arabidopsis thaliana AT3G03450 D 0.000
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.000
RGL3 Arabidopsis thaliana AT5G17490 I 0.000
RGL3 Arabidopsis lyrata fgenesh2_kg.6__1749__AT5G17490.1 I 0.000
Thhalv10015535m.g Eutrema salsugineum Thhalv10015535m.g I 0.000
Thhalv10020431m.g Eutrema salsugineum Thhalv10020431m.g I 0.000