SVE_1799900 (Strongyloides venezuelensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SVE_1799900 T157438_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.768 0.772
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.768 0.772
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.768 0.772
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.768 0.772
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.766 0.746
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.766 0.746
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.766 0.746
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.766 0.746
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.765 0.763
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.765 0.763
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.765 0.763
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.761 0.728
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.761 0.728
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.761 0.728
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVE_1799900.1 C2H2 ZF 193 215
SVE_1799900.1 C2H2 ZF 224 246
SVE_1799900.1 C2H2 ZF 250 272
SVE_1799900.1 C2H2 ZF 278 300
SVE_1799900.1 C2H2 ZF 306 327

Links

Other C2H2 ZF family TFs
Other Strongyloides venezuelensis TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29711.m000322 Ricinus communis 29711.m000322 I
29830.m001386 Ricinus communis 29830.m001386 I
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I
BGIOSGA008112 Oryza indica BGIOSGA008112 I
bHLH11 Vitis vinifera VIT_04s0023g03430 I
BHLH121 Arabidopsis thaliana AT3G19860 I
bHLH121 Vitis vinifera VIT_03s0038g01790 I
bHLH121 Arabidopsis lyrata fgenesh2_kg.3__2204__AT3G19860.1 I
Bo1g112310 Brassica oleracea Bo1g112310 I
Bostr.19424s0675 Boechera stricta Bostr.19424s0675 I
Bra038236 Brassica rapa Bra038236 I
BRADI3G11520 Brachypodium distachyon BRADI3G11520 I
Cagra.0316s0082 Capsella grandiflora Cagra.0316s0082 I
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I
Cla001685 Citrullus lanatus Cla001685 I
Cla014511 Citrullus lanatus Cla014511 I
Cucsa.043580 Cucumis sativus Cucsa.043580 I
Cucsa.169240 Cucumis sativus Cucsa.169240 I
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I
evm.TU.supercontig_17.155 Carica papaya evm.TU.supercontig_17.155 I
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I
GLYMA07G26910 Glycine max GLYMA07G26910 I
GLYMA08G15740 Glycine max GLYMA08G15740 I
GLYMA12G02740 Glycine max GLYMA12G02740 I
GLYMA15G29630 Glycine max GLYMA15G29630 I
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I
GRMZM2G114444 Zea mays GRMZM2G114444 I
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I
LPERR02G12290 Leersia perrieri LPERR02G12290 I
Lus10028456.g Linum usitatissimum Lus10028456.g I
Lus10041908.g Linum usitatissimum Lus10041908.g I
MDP0000275844 Malus domestica MDP0000275844 I
mgf017107m Mimulus guttatus mgf017107m I
MTR_4g075480 Medicago truncatula MTR_4g075480 I
OB0197G10010 Oryza brachyantha OB0197G10010 I
OPUNC02G13570 Oryza punctata OPUNC02G13570 I
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I
OS02G0433600 Oryza sativa OS02G0433600 I
Pavir.Aa02015 Panicum virgatum Pavir.Aa02015 I
Pavir.Ab01730 Panicum virgatum Pavir.Ab01730 I
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I
PK18401.1 Cannabis sativa PK18401.1 D
Pm021043 Prunus mume Pm021043 I
Pm026758 Prunus mume Pm026758 I
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I
Sb03g028030 Sorghum bicolor Sb03g028030 I
Si017804m.g Setaria italica Si017804m.g I
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I
TCM_000204 Theobroma cacao TCM_000204 I
TCM_006692 Theobroma cacao TCM_006692 I
Thhalv10021271m.g Eutrema salsugineum Thhalv10021271m.g I
Thhalv10023630m.g Eutrema salsugineum Thhalv10023630m.g I