kdm2bb (Takifugu rubripes)
CxxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02008 (zf-CXXC) IPR002857 ENSTRUG00000010230 T168369_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KDM2B
M01911_2.00 		Homo sapiens
NNNNNNCGN
NCGNNNNNN		 PBM
Weirauch et al.(2014)
pTH9191 		1.000 1.000
kdm2ba
M01909_2.00 		Danio rerio
NNNNCGN
NCGNNNN		 PBM
Weirauch et al.(2014)
pTH8577 		0.979 0.979
FBXL19
M01916_2.00 		Tetraodon nigroviridis
NNNNCGNN
NNCGNNNN		 PBM
Weirauch et al.(2014)
pTH8570 		0.894 0.894
A6H8I1_DANRE
M01906_2.00 		Danio rerio
CGTACGYA
TRCGTACG		 PBM
Weirauch et al.(2014)
pTH9257 		0.851 0.851
KDM2A
M01915_2.00 		Meleagris gallopavo
NNNNYRNNNN
NNNNYRNNNN		 PBM
Weirauch et al.(2014)
pTH9212 		0.809 0.809
BGIBMGA012843
M01907_2.00 		Bombyx mori
NNCGCGTANVNN
NNBNTACGCGNN		 PBM
Weirauch et al.(2014)
pTH9239 		0.766 0.766
kdm2aa
M01910_2.00 		Danio rerio
NCGNNNNNN
NNNNNNCGN		 PBM
Weirauch et al.(2014)
pTH8585 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000025770 CxxC 554 600
ENSTRUP00000025771 CxxC 543 589
ENSTRUP00000025772 CxxC 571 617
ENSTRUP00000025773 CxxC 545 591

Links

Other CxxC family TFs
Other Takifugu rubripes TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m011120 Ricinus communis 30190.m011120 I
Aquca_028_00229 Aquilegia coerulea Aquca_028_00229 N
cassava41192.m1 Manihot esculenta cassava41192.m1 I
cassava41218.m1 Manihot esculenta cassava41218.m1 I
Cla011674 Citrullus lanatus Cla011674 I
Cucsa.302750 Cucumis sativus Cucsa.302750 I
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I
MDP0000154764 Malus domestica MDP0000154764 I
MDP0000198054 Malus domestica MDP0000198054 I
MTR_5g010910 Medicago truncatula MTR_5g010910 N
MTR_5g010930 Medicago truncatula MTR_5g010930 I
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I
Pm023769 Prunus mume Pm023769 I
Pm023772 Prunus mume Pm023772 I
Pm023775 Prunus mume Pm023775 I
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I