cassava17583.valid.m1 (Manihot esculenta)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 cassava17583.valid.m1 T173796_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.838 0.838
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.838 0.838
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.838 0.838
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.676 0.676
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.676 0.676
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.676 0.676
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.676 0.676
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.610 0.610
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.610 0.610
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.610 0.610
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.610 0.610
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.610 0.610
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.610 0.610
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.596 0.596
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.596 0.596
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.596 0.596
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava17583.valid.m1 E2F 21 85
cassava17583.valid.m1 E2F 140 219

Links

Other E2F family TFs
Other Manihot esculenta TFs

329 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL004381 Aedes aegypti AAEL004381 I
AAEL011161 Aedes aegypti AAEL011161 I
AALB003439 Anopheles albimanus AALB003439 I
Aan_R014485 Calypte anna Aan_R014485 I
AARA001217 Anopheles arabiensis AARA001217 I
AATE006341 Anopheles atroparvus AATE006341 I
ACEP13490 Atta cephalotes ACEP13490 I
ACEP18843 Atta cephalotes ACEP18843 I
ACHR006446 Anopheles christyi ACHR006446 I
ACUA015009 Anopheles culicifacies ACUA015009 I
ACYPI004663 Acyrthosiphon pisum ACYPI004663 I
ADAC008993 Anopheles darlingi ADAC008993 I
ADIR003322 Anopheles dirus ADIR003322 I
AEPI005675 Anopheles epiroticus AEPI005675 I
AFAF009600 Anopheles farauti AFAF009600 I
AFAF016820 Anopheles farauti AFAF016820 I
Afo_R006638 Aptenodytes forsteri Afo_R006638 I
AFUN003674 Anopheles funestus AFUN003674 I
AFUN006011 Anopheles funestus AFUN006011 I
AGAP013411 Anopheles gambiae AGAP013411 I
Alligator_sinensis_CCG005631.1 Alligator sinensis Alligator_sinensis_CCG005631.1 I
Alligator_sinensis_CCG019960.1 Alligator sinensis Alligator_sinensis_CCG019960.1 I
AMAM016153 Anopheles maculatus AMAM016153 I
AMAM017484 Anopheles maculatus AMAM017484 I
AMEC010127 Anopheles melas AMEC010127 I
AMEM005678 Anopheles merus AMEM005678 I
AMIN000258 Anopheles minimus AMIN000258 I
AMIN003810 Anopheles minimus AMIN003810 I
AQUA008168 Anopheles quadriannulatus AQUA008168 I
ASTEI00261 Anopheles stephensi ASTEI00261 I
ASTEI00827 Anopheles stephensi ASTEI00827 I
ASTEI11145 Anopheles stephensi ASTEI11145 I
BBX Anolis carolinensis ENSACAG00000006532 I
BBX Bos taurus ENSBTAG00000006893 I
BBX Canis familiaris ENSCAFG00000009867 I
BBX Callithrix jacchus ENSCJAG00000004843 I
BBX Cavia porcellus ENSCPOG00000003575 I
bbx Danio rerio ENSDARG00000012699 I
BBX Dasypus novemcinctus ENSDNOG00000013923 I
Bbx Dipodomys ordii ENSDORG00000008169 I
BBX Equus caballus ENSECAG00000023413 I
BBX Erinaceus europaeus ENSEEUG00000014092 I
BBX Echinops telfairi ENSETEG00000005122 I
BBX Felis catus ENSFCAG00000007296 I
BBX Homo sapiens ENSG00000114439 D
bbx Gasterosteus aculeatus ENSGACG00000020111 I
BBX Gorilla gorilla ENSGGOG00000028441 I
BBX Loxodonta africana ENSLAFG00000006362 I
BBX Meleagris gallopavo ENSMGAG00000014384 I
BBX Myotis lucifugus ENSMLUG00000007351 I
BBX Macaca mulatta ENSMMUG00000008787 I
BBX Monodelphis domestica ENSMODG00000001748 I
Bbx Mus musculus ENSMUSG00000022641 D
BBX Ornithorhynchus anatinus ENSOANG00000007497 I
BBX Oryctolagus cuniculus ENSOCUG00000001686 I
BBX Otolemur garnettii ENSOGAG00000008056 I
BBX Ochotona princeps ENSOPRG00000017013 I
bbx Oryzias latipes ENSORLG00000005486 I
BBX Procavia capensis ENSPCAG00000013443 I
BBX Pan troglodytes ENSPTRG00000015187 I
BBX Pteropus vampyrus ENSPVAG00000010534 I
Bbx Rattus norvegicus ENSRNOG00000001971 I
BBX Sus scrofa ENSSSCG00000011943 I
bbx Tetraodon nigroviridis ENSTNIG00000008596 I
BBX Tursiops truncatus ENSTTRG00000013182 I
BBX Vicugna pacos ENSVPAG00000007818 I
bbx Drosophila melanogaster FBgn0024251 D
bbx.L Xenopus laevis XB-GENE-981431 I
BGIBMGA008274 Bombyx mori BGIBMGA008274 I
BGIBMGA010263 Bombyx mori BGIBMGA010263 I
BGLB001462 Biomphalaria glabrata BGLB001462 I
BGLB009093 Biomphalaria glabrata BGLB009093 I
Brh_R008020 Buceros rhinoceros Brh_R008020 I
CapteG223458 Capitella teleta CapteG223458 I
CapteG39110 Capitella teleta CapteG39110 I
CapteG39126 Capitella teleta CapteG39126 I
CBG00068 Caenorhabditis briggsae CBG00068 I
Cflo_01544--XP_624175.2_APIME Camponotus floridanus Cflo_01544--XP_624175.2_APIME I
Cflo_04908--XP_624175.2_APIME Camponotus floridanus Cflo_04908--XP_624175.2_APIME I
CGI_10003963 Crassostrea gigas CGI_10003963 I
CGI_10015746 Crassostrea gigas CGI_10015746 I
CGI_10018417 Crassostrea gigas CGI_10018417 I
CIC Canis familiaris ENSCAFG00000004858 I
CIC Callithrix jacchus ENSCJAG00000012847 I
CIC Dasypus novemcinctus ENSDNOG00000047657 I
Cic Dipodomys ordii ENSDORG00000008822 I
CIC Equus caballus ENSECAG00000011342 I
CIC Echinops telfairi ENSETEG00000017271 I
CIC Homo sapiens ENSG00000079432 I
CIC Gorilla gorilla ENSGGOG00000000192 I
Cic Mus musculus ENSMUSG00000005442 D
CIC Otolemur garnettii ENSOGAG00000003964 I
CIC Procavia capensis ENSPCAG00000017001 I
CIC Pan troglodytes ENSPTRG00000011051 I
CIC Pteropus vampyrus ENSPVAG00000016806 I
Cic Rattus norvegicus ENSRNOG00000056118 I
CIC Sus scrofa ENSSSCG00000003030 I
CIC Tupaia belangeri ENSTBEG00000009044 I
CIC Tetraodon nigroviridis ENSTNIG00000003521 I
CIC Takifugu rubripes ENSTRUG00000007193 I
CIC Tursiops truncatus ENSTTRG00000013873 I
cic Xenopus tropicalis XB-GENE-6467430 I
cica Danio rerio ENSDARG00000071150 I
cica Oryzias latipes ENSORLG00000007091 I
cicb Gasterosteus aculeatus ENSGACG00000009452 I
cicb Oryzias latipes ENSORLG00000013259 I
CLEC003268 Cimex lectularius CLEC003268 I
Cmyd_10001800 Chelonia mydas Cmyd_10001800 I
Cmyd_10015225 Chelonia mydas Cmyd_10015225 I
CPIJ005582 Culex quinquefasciatus CPIJ005582 I
CPIJ012202 Culex quinquefasciatus CPIJ012202 I
CpipJ_CPIJ005582 Culex pipiens CpipJ_CPIJ005582 I
CpipJ_CPIJ012202 Culex pipiens CpipJ_CPIJ012202 I
CRE24068 Caenorhabditis remanei CRE24068 I
csin104163 Clonorchis sinensis csin104163 I
CY34DRAFT_798812 Suillus luteus CY34DRAFT_798812 I
D915_09544 Fasciola hepatica D915_09544 I
D917_02434 Trichinella nativa D917_02434 I
D918_06270 Trichuris suis D918_06270 I
ECPE_0001539401 Echinostoma caproni ECPE_0001539401 I
ENSAMEG00000002574 Ailuropoda melanoleuca ENSAMEG00000002574 I
ENSAMXG00000014362 Astyanax mexicanus ENSAMXG00000014362 I
ENSAMXG00000017656 Astyanax mexicanus ENSAMXG00000017656 I
ENSAMXG00000018358 Astyanax mexicanus ENSAMXG00000018358 I
ENSAPLG00000005336 Anas platyrhynchos ENSAPLG00000005336 I
ENSBTAG00000019785 Bos taurus ENSBTAG00000019785 I
ENSBTAP00000009058-D1 Bos grunniens ENSBTAP00000009058-D1 I
ENSCPOG00000004391 Cavia porcellus ENSCPOG00000004391 I
ENSCSAG00000006313 Chlorocebus sabaeus ENSCSAG00000006313 I
ENSFALG00000006478 Ficedula albicollis ENSFALG00000006478 I
ENSFCAG00000012737 Felis catus ENSFCAG00000012737 I
ENSGMOG00000005167 Gadus morhua ENSGMOG00000005167 I
ENSGMOG00000015829 Gadus morhua ENSGMOG00000015829 I
ENSLACG00000001134 Latimeria chalumnae ENSLACG00000001134 I
ENSLACG00000002764 Latimeria chalumnae ENSLACG00000002764 I
ENSLOCG00000005165 Lepisosteus oculatus ENSLOCG00000005165 I
ENSMEUG00000016625 Macropus eugenii ENSMEUG00000016625 I
ENSMICG00000015176 Microcebus murinus ENSMICG00000015176 I
ENSMLUG00000016650 Myotis lucifugus ENSMLUG00000016650 I
ENSMMUG00000012174 Macaca mulatta ENSMMUG00000012174 I
ENSMMUP00000011518 Macaca fascicularis ENSMMUP00000011518 I
ENSMPUG00000007557 Mustela putorius furo ENSMPUG00000007557 I
ENSMPUG00000009907 Mustela putorius furo ENSMPUG00000009907 I
ENSNLEG00000003524 Nomascus leucogenys ENSNLEG00000003524 I
ENSNLEG00000010614 Nomascus leucogenys ENSNLEG00000010614 I
ENSOARG00000007985 Ovis aries ENSOARG00000007985 I
ENSOARG00000018829 Ovis aries ENSOARG00000018829 I
ENSOCUG00000006458 Oryctolagus cuniculus ENSOCUG00000006458 I
ENSONIG00000004775 Oreochromis niloticus ENSONIG00000004775 I
ENSONIG00000004979 Oreochromis niloticus ENSONIG00000004979 I
ENSONIG00000013108 Oreochromis niloticus ENSONIG00000013108 I
ENSP00000160740 Macaca fascicularis ENSP00000160740 I
ENSP00000160740-D1 Bos grunniens ENSP00000160740-D1 I
ENSPANG00000009039 Papio anubis ENSPANG00000009039 I
ENSPANG00000018335 Papio anubis ENSPANG00000018335 I
ENSPFOG00000000116 Poecilia formosa ENSPFOG00000000116 I
ENSPFOG00000000813 Poecilia formosa ENSPFOG00000000813 I
ENSPFOG00000016231 Poecilia formosa ENSPFOG00000016231 I
ENSPPYG00000010041 Pongo abelii ENSPPYG00000010041 I
ENSPPYG00000013578 Pongo abelii ENSPPYG00000013578 I
ENSPSIG00000015872 Pelodiscus sinensis ENSPSIG00000015872 I
ENSSHAG00000003009 Sarcophilus harrisii ENSSHAG00000003009 I
ENSSSCG00000025539 Sus scrofa ENSSSCG00000025539 I
ENSSTOG00000000852 Ictidomys tridecemlineatus ENSSTOG00000000852 I
ENSTGUG00000013611 Taeniopygia guttata ENSTGUG00000013611 I
ENSTSYG00000000857 Tarsius syrichta ENSTSYG00000000857 I
ENSXMAG00000009457 Xiphophorus maculatus ENSXMAG00000009457 I
GA16961 Drosophila pseudoobscura FBgn0076975 I
GALMADRAFT_340474 Galerina marginata GALMADRAFT_340474 I
GB43462 Apis mellifera GB43462 I
GB48450 Apis mellifera GB48450 I
GE17925 Drosophila yakuba FBgn0235361 I
GF20922 Drosophila ananassae FBgn0097927 I
Gfo_R002593 Geospiza fortis Gfo_R002593 I
GG19727 Drosophila erecta FBgn0111928 I
GI21541 Drosophila mojavensis FBgn0144271 I
GJ16014 Drosophila virilis FBgn0203199 I
GK25081 Drosophila willistoni FBgn0227040 I
GM23082 Drosophila sechellia FBgn0177950 I
gw.448.64.1 Branchiostoma floridae gw.448.64.1 I
gw.46.292.1 Branchiostoma floridae gw.46.292.1 I
HHAL000065-PA Halyomorpha halys HHAL000065-PA I
HMEL012996 Heliconius melpomene HMEL012996 I
Hsal_01854--XP_624175.2_APIME Harpegnathos saltator Hsal_01854--XP_624175.2_APIME I
Hsal_08911--XP_624175.2_APIME Harpegnathos saltator Hsal_08911--XP_624175.2_APIME I
ISCW010061 Ixodes scapularis ISCW010061 I
KGM_16790 Danaus plexippus KGM_16790 I
KGM_16941 Danaus plexippus KGM_16941 I
L798_02329 Zootermopsis nevadensis L798_02329 I
L798_08623 Zootermopsis nevadensis L798_08623 I
LCUP006498 Lucilia cuprina LCUP006498 I
LDEC000948 Leptinotarsa decemlineata LDEC000948 I
LLOJ007756 Lutzomyia longipalpis LLOJ007756 I
LotgiG89909 Lottia gigantea LotgiG89909 I
M404DRAFT_998162 Pisolithus tinctorius M404DRAFT_998162 I
MCINX015089 Melitaea cinxia MCINX015089 I
MDOA012813 Musca domestica MDOA012813 I
Myotis_brandtii_BBX_10016000 Myotis brandtii Myotis_brandtii_BBX_10016000 I
Myotis_brandtii_Cic_10007129 Myotis brandtii Myotis_brandtii_Cic_10007129 I
NV10910 Nasonia vitripennis NV10910 I
Ocbimv22001036m.g Octopus bimaculoides Ocbimv22001036m.g I
Ocbimv22037932m.g Octopus bimaculoides Ocbimv22037932m.g I
Ogr10275 Ophisaurus gracilis Ogr10275 I
Ogr11041 Ophisaurus gracilis Ogr11041 I
PAAG_02636 Paracoccidioides sp lutzii PAAG_02636 I
PAXRUDRAFT_130978 Paxillus rubicundulus PAXRUDRAFT_130978 I
PHUM079880 Pediculus humanus PHUM079880 I
PHUM230960 Pediculus humanus PHUM230960 I
PISMIDRAFT_61363 Pisolithus microcarpus PISMIDRAFT_61363 I
Pvit_02469 Pogona vitticeps Pvit_02469 I
Pvit_02876 Pogona vitticeps Pvit_02876 I
RPRC001090 Rhodnius prolixus RPRC001090 I
Sakowv30039572m.g Saccoglossus kowalevskii Sakowv30039572m.g I
Sakowv30042695m.g Saccoglossus kowalevskii Sakowv30042695m.g I
SBAD_0000026401 Soboliphyme baturini SBAD_0000026401 I
scaffold4-EXSNAP2012.129 Pristionchus exspectatus scaffold4-EXSNAP2012.129 I
SCLCIDRAFT_120630 Scleroderma citrinum SCLCIDRAFT_120630 I
SINV12425 Solenopsis invicta SINV12425 I
SMAR009315 Strigamia maritima SMAR009315 I
SMAR012744 Strigamia maritima SMAR012744 I
SPU_025292 Strongylocentrotus purpuratus SPU_025292 I
T265_01499 Opisthorchis viverrini T265_01499 I
Tal_R013114 Tyto alba Tal_R013114 I
TC004697 Tribolium castaneum TC004697 I
TC007499 Tribolium castaneum TC007499 I
tetur21g00740 Tetranychus urticae tetur21g00740 I
tetur23g01950 Tetranychus urticae tetur23g01950 I
TMUE_s0223001200 Trichuris muris TMUE_s0223001200 I
TTRE_0000098801 Trichuris trichiura TTRE_0000098801 I
TVAG_010230 Trichomonas vaginalis TVAG_010230 I
TVAG_344020 Trichomonas vaginalis TVAG_344020 I
XP_002932333 Xenopus tropicalis XP_002932333 I
YQE_03282 Dendroctonus ponderosae YQE_03282 I
YQE_06837 Dendroctonus ponderosae YQE_06837 I