Bo1g105420 (Brassica oleracea)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 Bo1g105420 T179080_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.856 0.856
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.856 0.856
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g105420.1 FAR1 71 178

Links

Other FAR1 family TFs
Other Brassica oleracea TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g098280 Brassica oleracea Bo5g098280 I 0.822
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.867
Bra031330 Brassica rapa Bra031330 I 0.833
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.867
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.867
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.800
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.800
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.800
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.800
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.789
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.811
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.789
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.800
FHY3 Arabidopsis thaliana AT3G22170 D 0.856
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.778
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.800
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.800
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.789
MDP0000286803 Malus domestica MDP0000286803 I 0.778
mgf009829m Mimulus guttatus mgf009829m I 0.789
mgf014333m Mimulus guttatus mgf014333m I 0.789
PK08903.1 Cannabis sativa PK08903.1 I 0.789
Pm014859 Prunus mume Pm014859 I 0.778
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.811
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.789
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.778
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.778
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.846
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.789
TCM_013043 Theobroma cacao TCM_013043 I 0.808
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.856