POPTR_0010s00360 (Populus trichocarpa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 POPTR_0010s00360 T194896_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.841 0.889
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.821 0.889
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.821 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s00360.1 GATA 34 69
POPTR_0010s00360.2 GATA 30 65
POPTR_0010s00360.3 GATA 30 65

Links

Other GATA family TFs
Other Populus trichocarpa TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29889.m003248 Ricinus communis 29889.m003248 I 0.862
30128.m008883 Ricinus communis 30128.m008883 N 0.808
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.807
Aquca_003_00608 Aquilegia coerulea Aquca_003_00608 N 0.806
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.851
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.810
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.836
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.836
Bo00847s050 Brassica oleracea Bo00847s050 I 0.852
Bo1g055120 Brassica oleracea Bo1g055120 I 0.846
Bo1g122970 Brassica oleracea Bo1g122970 I 0.846
Bo1g147740 Brassica oleracea Bo1g147740 I 0.812
Bo3g068560 Brassica oleracea Bo3g068560 I 0.846
Bo5g123610 Brassica oleracea Bo5g123610 I 0.846
Bo7g092660 Brassica oleracea Bo7g092660 I 0.821
Bo7g104200 Brassica oleracea Bo7g104200 I 0.846
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.852
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.821
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.846
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.851
Bra012742 Brassica rapa Bra012742 I 0.851
Bra020650 Brassica rapa Bra020650 I 0.825
Bra021209 Brassica rapa Bra021209 I 0.846
Bra022184 Brassica rapa Bra022184 I 0.846
Bra033533 Brassica rapa Bra033533 I 0.846
Bra037421 Brassica rapa Bra037421 I 0.821
Bra040288 Brassica rapa Bra040288 I 0.812
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.836
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.810
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.851
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.821
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.846
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.851
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.846
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.821
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.852
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.847
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.847
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.862
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.865
Ca_02992 Cicer arietinum Ca_02992 I 0.867
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.848
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.861
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.822
Cla009422 Citrullus lanatus Cla009422 I 0.861
Cla022104 Citrullus lanatus Cla022104 I 0.865
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.861
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.865
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.865
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.861
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.847
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.847
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.865
F775_43556 Aegilops tauschii F775_43556 I 0.806
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.851
GATA15 Arabidopsis thaliana AT3G06740 D 0.821
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.821
GATA16 Arabidopsis thaliana AT5G49300 D 0.841
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.852
GATA17 Arabidopsis thaliana AT3G16870 I 0.846
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.846
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.865
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.862
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.862
Gorai.002G029400 Gossypium raimondii Gorai.002G029400 I 0.820
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.865
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.847
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.848
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.847
GRMZM2G114775 Zea mays GRMZM2G114775 I 0.806
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.867
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.836
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.810
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.865
Lus10020684.g Linum usitatissimum Lus10020684.g N 0.811
Lus10029863.g Linum usitatissimum Lus10029863.g N 0.811
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.828
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.865
MDP0000309902 Malus domestica MDP0000309902 I 0.828
mgf003937m Mimulus guttatus mgf003937m I 0.865
mgf022078m Mimulus guttatus mgf022078m I 0.822
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.810
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.867
OB01G55040 Oryza brachyantha OB01G55040 I 0.810
OBART01G45830 Oryza barthii OBART01G45830 I 0.810
OBART03G39750 Oryza barthii OBART03G39750 I 0.836
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.810
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.836
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.810
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.836
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.836
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.810
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.836
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.836
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.836
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.848
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.861
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.822
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.810
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.810
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.836
OS01G0976800 Oryza sativa OS01G0976800 I 0.810
OS03G0831200 Oryza sativa OS03G0831200 I 0.836
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.810
Pavir.J03766 Panicum virgatum Pavir.J03766 I 0.806
Pavir.J12379 Panicum virgatum Pavir.J12379 I 0.806
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.843
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.861
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.846
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.809
PK18820.1 Cannabis sativa PK18820.1 I 0.861
PK21934.1 Cannabis sativa PK21934.1 I 0.833
Pm003128 Prunus mume Pm003128 I 0.821
Pm008287 Prunus mume Pm008287 I 0.865
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.847
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.867
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.865
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.821
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.847
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.847
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.867
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.867
Sb01g002270 Sorghum bicolor Sb01g002270 I 0.806
Sb03g047520 Sorghum bicolor Sb03g047520 I 0.810
Si002983m.g Setaria italica Si002983m.g I 0.810
Si037892m.g Setaria italica Si037892m.g I 0.806
Solyc01g060490.2 Solanum lycopersicum Solyc01g060490.2 N 0.812
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.809
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.846
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.861
TCM_004753 Theobroma cacao TCM_004753 I 0.848
TCM_021303 Theobroma cacao TCM_021303 I 0.865
TCM_026732 Theobroma cacao TCM_026732 I 0.847
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.852
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.846
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.821
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.846
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.810
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.810
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.806
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.810
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.861
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.821