CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene14780-v1.0-hybrid
(
Fragaria vesca
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
gene14780-v1.0-hybrid
T202567_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna14780.1-v1.0-hybrid
GRAS
250
619
LLKALLDCARVIESEPERAIKSLVRLRESVSERGDPTERVTFRFTEALYSRVSPPPDKTSAAYDGSCEEDFTLSYKALNDACPYSKFAHLTANQAILEATERATKIHIVDFGIVQGVQWAALLQALATRSTGKPSKIRISGIPAPSLGNSPAASLFATGNRLCEFAKLLELNFEFEPVLTPIQELNESCFRVDPDEFLAVNLMLQLHNLLDESTTGVEAALTLAKLLNPKIVTLGEYEAKLNRVGFMSRFKTALKYYKAMFESLEPNMARDSPERLQVERLLLGRRIASVVGAEESGTKRQRLEDKEQWKFLMESAGFEPVTLSHYAVSQAKILLWNYSYNASYSLIESPPGFLSLAWKEVPLFTVSSWR
Links
Other
GRAS
family TFs
Other
Fragaria vesca
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29634.m002156
Ricinus communis
29634.m002156
N
0.753
Aquca_010_00478
Aquilegia coerulea
Aquca_010_00478
N
0.716
cassava18797.valid.m1
Manihot esculenta
cassava18797.valid.m1
N
0.763
cassava35611.valid.m1
Manihot esculenta
cassava35611.valid.m1
N
0.744
Cla014744
Citrullus lanatus
Cla014744
N
0.735
Cucsa.201400
Cucumis sativus
Cucsa.201400
N
0.719
Eucgr.I02451
Eucalyptus grandis
Eucgr.I02451
N
0.705
evm.TU.supercontig_6.108
Carica papaya
evm.TU.supercontig_6.108
N
0.741
Gorai.003G015400
Gossypium raimondii
Gorai.003G015400
N
0.758
Gorai.008G068100
Gossypium raimondii
Gorai.008G068100
N
0.782
Lus10024014.g
Linum usitatissimum
Lus10024014.g
N
0.730
Lus10041740.g
Linum usitatissimum
Lus10041740.g
N
0.714
MDP0000575908
Malus domestica
MDP0000575908
N
0.767
mgf021185m
Mimulus guttatus
mgf021185m
N
0.718
PK13108.1
Cannabis sativa
PK13108.1
N
0.748
Pm026616
Prunus mume
Pm026616
N
0.801
POPTR_0005s12520
Populus trichocarpa
POPTR_0005s12520
N
0.716
POPTR_0007s12760
Populus trichocarpa
POPTR_0007s12760
N
0.722
PRUPE_ppa003124mg
Prunus persica
PRUPE_ppa003124mg
N
0.807
SapurV1A.0254s0130
Salix purpurea
SapurV1A.0254s0130
N
0.702
SapurV1A.1131s0040
Salix purpurea
SapurV1A.1131s0040
N
0.730
SapurV1A.4211s0010
Salix purpurea
SapurV1A.4211s0010
N
0.702
TCM_000399
Theobroma cacao
TCM_000399
N
0.782
VIT_04s0023g01660
Vitis vinifera
VIT_04s0023g01660
N
0.740