BRADI4G00740 (Brachypodium distachyon)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 BRADI4G00740 T205266_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.842 0.755
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.551
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.602 0.408
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.602 0.408
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.602 0.408
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.602 0.408
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI4G00740.2 Homeodomain 398 449
BRADI4G00740.3 Homeodomain 398 449

Links

Other Homeodomain family TFs
Other Brachypodium distachyon TFs

1012 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.000
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.000
Bo9g006450 Brassica oleracea Bo9g006450 I 0.000
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.000
Bra034196 Brassica rapa Bra034196 I 0.000
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.000
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.000
cassava16534.m1 Manihot esculenta cassava16534.m1 I 0.000
Ciclev10014928m.g Citrus clementina Ciclev10014928m.g I 0.000
Cla008712 Citrullus lanatus Cla008712 I 0.000
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.000
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.000
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.000
Gorai.001G134800 Gossypium raimondii Gorai.001G134800 I 0.000
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.000
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.000
MDP0000207866 Malus domestica MDP0000207866 I 0.000
mgf000172m Mimulus guttatus mgf000172m I 0.000
mgf007720m Mimulus guttatus mgf007720m I 0.000
orange1.1g010311m.g Citrus sinensis orange1.1g010311m.g I 0.000
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.000
PK25011.1 Cannabis sativa PK25011.1 D 0.000
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.000
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.000
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.000
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.000
TCM_040945 Theobroma cacao TCM_040945 I 0.000
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.000