Nkx6-3 (Mus musculus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSMUSG00000063672 T212557_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nkx6-3
M00522_2.00
Mus musculus
NDYDATNRN

NYNATHRHN
PBM
Berger et al.(2008)
Nkx6-3_3446
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NKX6-3
M05242_2.00
Homo sapiens
NWTAATGRB

VYCATTAWN
SELEX
Yin et al.(2017)
NKX6-3_eDBD_HT-SELEX
0.867 1.000
NKX6-3
M05243_2.00
Homo sapiens
DWTAATGRB

VYCATTAWH
SELEX
Yin et al.(2017)
NKX6-3_eDBD_Methyl-HT-SELEX
0.867 1.000
Nkx6-1
M00466_2.00
Mus musculus
NDTDATNRN

NYNATHAHN
PBM
Berger et al.(2008)
Nkx6-1_2825
0.867 0.965
NKX6-1
M09151_2.00
Homo sapiens
RAHWRATKDSNWWWTRATD

HATYAWWWNSHMATYWDTY
Misc
Kulakovskiy et al.(2013)
NKX61_HUMAN.H11MO.0.B
0.867 0.965
Nkx6-1
M09200_2.00
Mus musculus
HNWRATKDNHWWWTRATDR

YHATYAWWWDNHMATYWND
Misc
Kulakovskiy et al.(2013)
NKX61_MOUSE.H11MO.0.A
0.867 0.965
Nkx6-1
M09573_2.00
Mus musculus
NDTAATKR

YMATTAHN
Misc
Heinz et al.(2010)
Islet-Nkx6.1_GSE40975
0.867 0.965
NKX6-1
M10718_2.00
Homo sapiens
HWTTTAATKGRWT

AWYCMATTAAAWD
Transfac
Matys et al.(2006)
V$NKX61_01
0.867 0.965
NKX6-1
M10719_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX61_08
0.867 0.965
NKX6-2
M05184_2.00
Homo sapiens
DTAATTRN

NYAATTAH
SELEX
Yin et al.(2017)
NKX6-2_eDBD_HT-SELEX
0.858 0.947
NKX6-2
M05186_2.00
Homo sapiens
WTAATKAB

VTMATTAW
SELEX
Yin et al.(2017)
NKX6-2_FL_HT-SELEX
0.858 0.947
NKX6-2
M10711_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX62_Q2
0.858 0.947
NKX6-2
M05185_2.00
Homo sapiens
NTMATKRN

NYMATKAN
SELEX
Yin et al.(2017)
NKX6-2_eDBD_Methyl-HT-SELEX
0.858 0.947
NKX6-2
M05187_2.00
Homo sapiens
WTAATKAB

VTMATTAW
SELEX
Yin et al.(2017)
NKX6-2_FL_Methyl-HT-SELEX
0.858 0.947
HGTX
M03869_2.00
Drosophila melanogaster
DTAATKRN

NYMATTAH
SELEX
Nitta et al.(2015)
HGTX_1
0.855 0.912
HGTX
M03870_2.00
Drosophila melanogaster
DTAATKRN

NYMATTAH
SELEX
Nitta et al.(2015)
HGTX_2
0.855 0.912
HGTX
M06542_2.00
Drosophila melanogaster
DTAATKA

TMATTAH
B1H
Mathelier et al.(2014)
MA0191.1
0.855 0.912
HGTX
M06360_2.00
Drosophila melanogaster
DDTAATKA

TMATTAHH
B1H
Zhu et al.(2011)
Hgtx_Cell_FBgn0040318
0.855 0.912
HGTX
M06361_2.00
Drosophila melanogaster
NWTAATKA

TMATTAWN
B1H
Zhu et al.(2011)
Hgtx_SOLEXA_FBgn0040318
0.855 0.912
CBG20882
M01244_2.00
Caenorhabditis briggsae
NDHDATDRN

NYHATHDHN
PBM
Lambert et al.(2019)
pTH11477
0.811 0.772
Q0N4H9_NEMVE
M02165_2.00
Nematostella vectensis
NNYRWWNNN

NNNWWYRNN
PBM
Weirauch et al.(2014)
pTH6101
0.685 0.561
NEMVEDRAFT_v1g129868
M02146_2.00
Nematostella vectensis
NYRAWNDNN

NNHNWTYRN
PBM
Weirauch et al.(2014)
pTH5749
0.679 0.561
NK7.1
M03847_2.00
Drosophila melanogaster
VTTAAAYGDTD

HAHCRTTTAAB
SELEX
Nitta et al.(2015)
NK7.1_1
0.617 0.632
NK7.1
M03848_2.00
Drosophila melanogaster
NSTTAATTGVY

RBCAATTAASN
SELEX
Nitta et al.(2015)
NK7.1_2
0.617 0.632
NK7.1
M06524_2.00
Drosophila melanogaster
TTAATDR

YHATTAA
B1H
Mathelier et al.(2014)
MA0196.1
0.617 0.632
NK7.1
M06323_2.00
Drosophila melanogaster
NTTAATDR

YHATTAAN
B1H
Zhu et al.(2011)
NK7.1_Cell_FBgn0024321
0.617 0.632
NK7.1
M06324_2.00
Drosophila melanogaster
YTAATDR

YHATTAR
B1H
Zhu et al.(2011)
NK7.1_SOLEXA_FBgn0024321
0.617 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00522_2.00 Homeodomain 17 73

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000071517 Homeodomain 146 202

Links

Other Homeodomain family TFs
Other Mus musculus TFs

316 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29737.m001227 Ricinus communis 29737.m001227 I 0.000
29848.m004559 Ricinus communis 29848.m004559 I 0.000
29889.m003245 Ricinus communis 29889.m003245 I 0.000
29929.m004752 Ricinus communis 29929.m004752 I 0.000
AMTR_s00049p00081480 Amborella trichopoda AMTR_s00049p00081480 I 0.000
Aquca_003_00615 Aquilegia coerulea Aquca_003_00615 I 0.000
Aquca_011_00344 Aquilegia coerulea Aquca_011_00344 I 0.000
Aquca_016_00168 Aquilegia coerulea Aquca_016_00168 I 0.000
Aquca_056_00105 Aquilegia coerulea Aquca_056_00105 I 0.000
ARR11 Arabidopsis thaliana AT1G67710 D 0.000
ARR11 Arabidopsis lyrata scaffold_201596.1 I 0.000
ARR11 Vitis vinifera VIT_01s0010g02230 I 0.000
ARR12 Arabidopsis thaliana AT2G25180 I 0.000
ARR12 Arabidopsis lyrata fgenesh2_kg.4__435__AT2G25180.1 I 0.000
BGIOSGA000304 Oryza indica BGIOSGA000304 I 0.000
Bo2g028820 Brassica oleracea Bo2g028820 I 0.000
Bo4g157430 Brassica oleracea Bo4g157430 I 0.000
Bo6g098710 Brassica oleracea Bo6g098710 I 0.000
Bo6g105120 Brassica oleracea Bo6g105120 I 0.000
Bostr.26833s0442 Boechera stricta Bostr.26833s0442 I 0.000
Bostr.26959s0139 Boechera stricta Bostr.26959s0139 I 0.000
Bra004076 Brassica rapa Bra004076 I 0.000
Bra004245 Brassica rapa Bra004245 I 0.000
Bra020390 Brassica rapa Bra020390 I 0.000
Bra032035 Brassica rapa Bra032035 I 0.000
BRADI2G58020 Brachypodium distachyon BRADI2G58020 I 0.000
BRADI3G06120 Brachypodium distachyon BRADI3G06120 I 0.000
Cagra.0891s0003 Capsella grandiflora Cagra.0891s0003 I 0.000
Cagra.2261s0012 Capsella grandiflora Cagra.2261s0012 I 0.000
Cagra.2381s0022 Capsella grandiflora Cagra.2381s0022 I 0.000
Carubv10020133m.g Capsella rubella Carubv10020133m.g I 0.000
Carubv10022837m.g Capsella rubella Carubv10022837m.g I 0.000
Carubv10026052m.g Capsella rubella Carubv10026052m.g I 0.000
cassava13981.valid.m1 Manihot esculenta cassava13981.valid.m1 I 0.000
cassava18404.valid.m1 Manihot esculenta cassava18404.valid.m1 I 0.000
cassava18405.valid.m1 Manihot esculenta cassava18405.valid.m1 I 0.000
cassava262.valid.m1 Manihot esculenta cassava262.valid.m1 I 0.000
cassava29171.valid.m1 Manihot esculenta cassava29171.valid.m1 I 0.000
cassava32312.m1 Manihot esculenta cassava32312.m1 I 0.000
cassava43032.valid.m1 Manihot esculenta cassava43032.valid.m1 I 0.000
cassava8114.valid.m1 Manihot esculenta cassava8114.valid.m1 I 0.000
Ca_02989 Cicer arietinum Ca_02989 I 0.000
Ca_03351 Cicer arietinum Ca_03351 I 0.000
Ca_11309 Cicer arietinum Ca_11309 I 0.000
chr5.CM0345.260.nd Lotus japonicus chr5.CM0345.260.nd I 0.000
chr6.CM0037.920.nc Lotus japonicus chr6.CM0037.920.nc I 0.000
Ciclev10004470m.g Citrus clementina Ciclev10004470m.g I 0.000
Ciclev10007639m.g Citrus clementina Ciclev10007639m.g I 0.000
Ciclev10007648m.g Citrus clementina Ciclev10007648m.g I 0.000
Ciclev10031052m.g Citrus clementina Ciclev10031052m.g I 0.000
Cla009424 Citrullus lanatus Cla009424 I 0.000
Cla021325 Citrullus lanatus Cla021325 I 0.000
Cla022101 Citrullus lanatus Cla022101 I 0.000
Cla023064 Citrullus lanatus Cla023064 I 0.000
Cucsa.252760 Cucumis sativus Cucsa.252760 I 0.000
Cucsa.271670 Cucumis sativus Cucsa.271670 I 0.000
Cucsa.350850 Cucumis sativus Cucsa.350850 I 0.000
Cucsa.394720 Cucumis sativus Cucsa.394720 I 0.000
estExt_Genewise1.C_90203 Chlorella NC64A estExt_Genewise1.C_90203 I 0.000
Eucgr.A00189 Eucalyptus grandis Eucgr.A00189 I 0.000
Eucgr.C00380 Eucalyptus grandis Eucgr.C00380 I 0.000
Eucgr.C04050 Eucalyptus grandis Eucgr.C04050 I 0.000
Eucgr.H04693 Eucalyptus grandis Eucgr.H04693 I 0.000
Eucgr.H04694 Eucalyptus grandis Eucgr.H04694 I 0.000
evm.TU.supercontig_46.117 Carica papaya evm.TU.supercontig_46.117 I 0.000
evm.TU.supercontig_86.17 Carica papaya evm.TU.supercontig_86.17 I 0.000
evm.TU.supercontig_9.105 Carica papaya evm.TU.supercontig_9.105 I 0.000
F775_13501 Aegilops tauschii F775_13501 I 0.000
F775_19079 Aegilops tauschii F775_19079 I 0.000
F775_27736 Aegilops tauschii F775_27736 I 0.000
GLYMA04G06650 Glycine max GLYMA04G06650 I 0.000
GLYMA05G27670 Glycine max GLYMA05G27670 I 0.000
GLYMA06G06730 Glycine max GLYMA06G06730 I 0.000
GLYMA07G37220 Glycine max GLYMA07G37220 I 0.000
GLYMA08G10650 Glycine max GLYMA08G10650 I 0.000
GLYMA09G14650 Glycine max GLYMA09G14650 I 0.000
GLYMA11G37480 Glycine max GLYMA11G37480 I 0.000
GLYMA14G13320 Glycine max GLYMA14G13320 I 0.000
GLYMA15G15520 Glycine max GLYMA15G15520 I 0.000
GLYMA15G24770 Glycine max GLYMA15G24770 I 0.000
GLYMA17G03380 Glycine max GLYMA17G03380 I 0.000
GLYMA18G01434 Glycine max GLYMA18G01434 I 0.000
Gorai.002G029200 Gossypium raimondii Gorai.002G029200 I 0.000
Gorai.004G291100 Gossypium raimondii Gorai.004G291100 I 0.000
Gorai.005G173300 Gossypium raimondii Gorai.005G173300 I 0.000
Gorai.009G054200 Gossypium raimondii Gorai.009G054200 I 0.000
Gorai.009G061000 Gossypium raimondii Gorai.009G061000 I 0.000
Gorai.010G243900 Gossypium raimondii Gorai.010G243900 I 0.000
Gorai.011G196400 Gossypium raimondii Gorai.011G196400 I 0.000
GRMZM2G060485 Zea mays GRMZM2G060485 I 0.000
GRMZM2G100318 Zea mays GRMZM2G100318 I 0.000
GRMZM2G177220 Zea mays GRMZM2G177220 I 0.000
GRMZM2G479110 Zea mays GRMZM2G479110 I 0.000
GSMUA_Achr3G14630_001 Musa acuminata GSMUA_Achr3G14630_001 I 0.000
GSMUA_Achr8G32070_001 Musa acuminata GSMUA_Achr8G32070_001 I 0.000
GSMUA_Achr9G16610_001 Musa acuminata GSMUA_Achr9G16610_001 I 0.000
LjSGA_022114.1 Lotus japonicus LjSGA_022114.1 I 0.000
LPERR01G35510 Leersia perrieri LPERR01G35510 I 0.000
LPERR06G04900 Leersia perrieri LPERR06G04900 I 0.000
Lus10006446.g Linum usitatissimum Lus10006446.g I 0.000
Lus10011389.g Linum usitatissimum Lus10011389.g I 0.000
Lus10016846.g Linum usitatissimum Lus10016846.g I 0.000
Lus10019058.g Linum usitatissimum Lus10019058.g I 0.000
Lus10036303.g Linum usitatissimum Lus10036303.g I 0.000
Lus10037719.g Linum usitatissimum Lus10037719.g I 0.000
MDP0000224740 Malus domestica MDP0000224740 I 0.000
MDP0000290818 Malus domestica MDP0000290818 I 0.000
MDP0000305167 Malus domestica MDP0000305167 I 0.000
MDP0000307383 Malus domestica MDP0000307383 I 0.000
MDP0000320381 Malus domestica MDP0000320381 I 0.000
mgf000016m Mimulus guttatus mgf000016m I 0.000
mgf004388m Mimulus guttatus mgf004388m I 0.000
mgf013006m Mimulus guttatus mgf013006m I 0.000
MLOC_23250 Hordeum vulgare MLOC_23250 I 0.000
MLOC_3955 Hordeum vulgare MLOC_3955 I 0.000
MLOC_61880 Hordeum vulgare MLOC_61880 I 0.000
MTR_1g013180 Medicago truncatula MTR_1g013180 I 0.000
MTR_3g086100 Medicago truncatula MTR_3g086100 I 0.000
MTR_4g121020 Medicago truncatula MTR_4g121020 I 0.000
MTR_8g079940 Medicago truncatula MTR_8g079940 I 0.000
OB01G49660 Oryza brachyantha OB01G49660 I 0.000
OB02G42700 Oryza brachyantha OB02G42700 I 0.000
OB06G14930 Oryza brachyantha OB06G14930 I 0.000
OBART01G40940 Oryza barthii OBART01G40940 I 0.000
OBART06G05360 Oryza barthii OBART06G05360 I 0.000
OGLUM01G45120 Oryza glumaepatula OGLUM01G45120 I 0.000
OGLUM06G05540 Oryza glumaepatula OGLUM06G05540 I 0.000
OLONG_004141 Oryza longistaminata OLONG_004141 I 0.000
OMERI01G37950 Oryza meridionalis OMERI01G37950 I 0.000
OMERI06G06380 Oryza meridionalis OMERI06G06380 I 0.000
ONIVA01G45980 Oryza nivara ONIVA01G45980 I 0.000
ONIVA06G06160 Oryza nivara ONIVA06G06160 I 0.000
OPUNC01G39740 Oryza punctata OPUNC01G39740 I 0.000
OPUNC06G05150 Oryza punctata OPUNC06G05150 I 0.000
orange1.1g005465m.g Citrus sinensis orange1.1g005465m.g I 0.000
orange1.1g005719m.g Citrus sinensis orange1.1g005719m.g I 0.000
orange1.1g007940m.g Citrus sinensis orange1.1g007940m.g I 0.000
orange1.1g027234m.g Citrus sinensis orange1.1g027234m.g I 0.000
ORGLA01G0348700 Oryza glaberrima ORGLA01G0348700 I 0.000
ORGLA02G0311700 Oryza glaberrima ORGLA02G0311700 I 0.000
ORGLA06G0048800 Oryza glaberrima ORGLA06G0048800 I 0.000
ORUFI01G44260 Oryza rufipogon ORUFI01G44260 I 0.000
ORUFI06G05490 Oryza rufipogon ORUFI06G05490 I 0.000
Pavir.Aa03151 Panicum virgatum Pavir.Aa03151 I 0.000
Pavir.Ab00568 Panicum virgatum Pavir.Ab00568 I 0.000
Pavir.Da02067 Panicum virgatum Pavir.Da02067 I 0.000
Pavir.Ea03527 Panicum virgatum Pavir.Ea03527 I 0.000
Pavir.J08270 Panicum virgatum Pavir.J08270 I 0.000
Pavir.J23046 Panicum virgatum Pavir.J23046 I 0.000
Pavir.J35630 Panicum virgatum Pavir.J35630 I 0.000
PDK_20s1342911g003 Phoenix dactylifera PDK_20s1342911g003 I 0.000
PDK_20s1362511g001 Phoenix dactylifera PDK_20s1362511g001 I 0.000
PDK_20s1379531g004 Phoenix dactylifera PDK_20s1379531g004 I 0.000
PDK_20s1782651g001 Phoenix dactylifera PDK_20s1782651g001 I 0.000
PGSC0003DMG400011980 Solanum tuberosum PGSC0003DMG400011980 I 0.000
PGSC0003DMG400023534 Solanum tuberosum PGSC0003DMG400023534 I 0.000
PGSC0003DMG401025624 Solanum tuberosum PGSC0003DMG401025624 I 0.000
PK07924.1 Cannabis sativa PK07924.1 D 0.000
PK26059.1 Cannabis sativa PK26059.1 I 0.000
Pm006838 Prunus mume Pm006838 I 0.000
POPTR_0006s20220 Populus trichocarpa POPTR_0006s20220 I 0.000
POPTR_0008s18130 Populus trichocarpa POPTR_0008s18130 I 0.000
POPTR_0008s22990 Populus trichocarpa POPTR_0008s22990 I 0.000
POPTR_0010s00320 Populus trichocarpa POPTR_0010s00320 I 0.000
POPTR_0010s06290 Populus trichocarpa POPTR_0010s06290 I 0.000
POPTR_0018s11960 Populus trichocarpa POPTR_0018s11960 I 0.000
PRUPE_ppa002408mg Prunus persica PRUPE_ppa002408mg I 0.000
PRUPE_ppa002679mg Prunus persica PRUPE_ppa002679mg I 0.000
RR22 Oryza indica BGIOSGA022430 I 0.000
RR22 Oryza sativa OS06G0183100 I 0.000
RR23 Oryza indica BGIOSGA005436 I 0.000
RR23 Oryza sativa OS02G0796500 I 0.000
RR26 Oryza sativa OS01G0904700 I 0.000
SapurV1A.0100s0230 Salix purpurea SapurV1A.0100s0230 I 0.000
SapurV1A.0152s0010 Salix purpurea SapurV1A.0152s0010 I 0.000
SapurV1A.0206s0280 Salix purpurea SapurV1A.0206s0280 I 0.000
SapurV1A.0347s0250 Salix purpurea SapurV1A.0347s0250 I 0.000
SapurV1A.0629s0180 Salix purpurea SapurV1A.0629s0180 I 0.000
SapurV1A.0730s0060 Salix purpurea SapurV1A.0730s0060 I 0.000
Sb03g043080 Sorghum bicolor Sb03g043080 I 0.000
Sb04g005580 Sorghum bicolor Sb04g005580 I 0.000
Sb04g035980 Sorghum bicolor Sb04g035980 I 0.000
Sb10g005580 Sorghum bicolor Sb10g005580 I 0.000
SELMODRAFT_173793 Selaginella moellendorffii SELMODRAFT_173793 I 0.000
SELMODRAFT_450181 Selaginella moellendorffii SELMODRAFT_450181 I 0.000
Si000815m.g Setaria italica Si000815m.g I 0.000
Si006013m.g Setaria italica Si006013m.g I 0.000
Si016546m.g Setaria italica Si016546m.g I 0.000
Si016630m.g Setaria italica Si016630m.g I 0.000
Solyc01g065540.2 Solanum lycopersicum Solyc01g065540.2 I 0.000
Solyc05g014260.2 Solanum lycopersicum Solyc05g014260.2 I 0.000
Solyc05g054390.2 Solanum lycopersicum Solyc05g054390.2 I 0.000
TCM_010701 Theobroma cacao TCM_010701 I 0.000
TCM_021300 Theobroma cacao TCM_021300 I 0.000
TCM_036926 Theobroma cacao TCM_036926 I 0.000
TCM_037098 Theobroma cacao TCM_037098 I 0.000
Thhalv10000098m.g Eutrema salsugineum Thhalv10000098m.g I 0.000
Thhalv10015296m.g Eutrema salsugineum Thhalv10015296m.g I 0.000
Thhalv10018396m.g Eutrema salsugineum Thhalv10018396m.g I 0.000
TRAES3BF094200030CFD_g Triticum aestivum TRAES3BF094200030CFD_g I 0.000
TRAES3BF107400040CFD_g Triticum aestivum TRAES3BF107400040CFD_g I 0.000
Traes_3AL_9D2735F60 Triticum aestivum Traes_3AL_9D2735F60 I 0.000
Traes_3B_D9F27151E Triticum aestivum Traes_3B_D9F27151E I 0.000
Traes_3DL_D82CA7827 Triticum aestivum Traes_3DL_D82CA7827 I 0.000
Traes_6AS_A42E71A00 Triticum aestivum Traes_6AS_A42E71A00 I 0.000
Traes_6BS_B50BEBC7E Triticum aestivum Traes_6BS_B50BEBC7E I 0.000
Traes_6DS_EF4A57213 Triticum aestivum Traes_6DS_EF4A57213 I 0.000
Traes_7AS_DECB8080D Triticum aestivum Traes_7AS_DECB8080D I 0.000
Traes_7DS_22DE624A5 Triticum aestivum Traes_7DS_22DE624A5 I 0.000
TRIUR3_26858 Triticum urartu TRIUR3_26858 I 0.000
TRIUR3_28229 Triticum urartu TRIUR3_28229 I 0.000
TRIUR3_31924 Triticum urartu TRIUR3_31924 I 0.000
VIT_04s0008g05900 Vitis vinifera VIT_04s0008g05900 I 0.000
VIT_05s0077g01480 Vitis vinifera VIT_05s0077g01480 I 0.000
VIT_11s0206g00060 Vitis vinifera VIT_11s0206g00060 I 0.000
VIT_17s0000g10100 Vitis vinifera VIT_17s0000g10100 I 0.000