Lus10016026.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10016026.g T228871_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GRMZM2G038252
M02137_2.00 		Zea mays
HTRATTGV
BCAATYAD		 PBM
Weirauch et al.(2014)
pTH6141 		0.764 0.667
WOX13
M02049_2.00 		Arabidopsis thaliana
YTGATTGA
TCAATCAR		 PBM
Weirauch et al.(2014)
pTH6461 		0.764 0.632
WOX13
M00866_2.00 		Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN		 PBM
Franco-Zorrilla et al.(2014)
WOX13 		0.764 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10016026 Homeodomain 98 159

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29830.m001452 Ricinus communis 29830.m001452 I 0.764
30170.m014389 Ricinus communis 30170.m014389 I 0.784
AMTR_s00044p00155390 Amborella trichopoda AMTR_s00044p00155390 I 0.767
Aquca_007_00901 Aquilegia coerulea Aquca_007_00901 I 0.764
Aquca_015_00333 Aquilegia coerulea Aquca_015_00333 I 0.766
BGIOSGA004695 Oryza indica BGIOSGA004695 I 0.764
Bo09314s010 Brassica oleracea Bo09314s010 I 0.742
Bo1g006370 Brassica oleracea Bo1g006370 I 0.764
Bo3g155580 Brassica oleracea Bo3g155580 I 0.726
Bo5g030590 Brassica oleracea Bo5g030590 I 0.740
Bo5g136700 Brassica oleracea Bo5g136700 I 0.606
Bo7g061410 Brassica oleracea Bo7g061410 I 0.742
Bo7g117480 Brassica oleracea Bo7g117480 I 0.764
Bostr.19424s1059 Boechera stricta Bostr.19424s1059 I 0.606
Bostr.3717s0001 Boechera stricta Bostr.3717s0001 I 0.740
Bostr.7128s0661 Boechera stricta Bostr.7128s0661 I 0.772
Bostr.7867s1413 Boechera stricta Bostr.7867s1413 I 0.764
Bra010531 Brassica rapa Bra010531 I 0.726
Bra011623 Brassica rapa Bra011623 I 0.764
Bra012245 Brassica rapa Bra012245 I 0.642
Bra017720 Brassica rapa Bra017720 I 0.764
Bra025839 Brassica rapa Bra025839 I 0.740
BRADI2G53390 Brachypodium distachyon BRADI2G53390 I 0.767
Cagra.1655s0045 Capsella grandiflora Cagra.1655s0045 I 0.606
Cagra.2350s0096 Capsella grandiflora Cagra.2350s0096 I 0.764
Cagra.6160s0025 Capsella grandiflora Cagra.6160s0025 I 0.740
Cagra.6160s0026 Capsella grandiflora Cagra.6160s0026 I 0.740
Carubv10005217m.g Capsella rubella Carubv10005217m.g I 0.764
Carubv10010349m.g Capsella rubella Carubv10010349m.g I 0.740
Carubv10012447m.g Capsella rubella Carubv10012447m.g I 0.740
Carubv10016169m.g Capsella rubella Carubv10016169m.g I 0.606
cassava23423.valid.m1 Manihot esculenta cassava23423.valid.m1 I 0.764
cassava39214.m1 Manihot esculenta cassava39214.m1 I 0.785
Ca_04823 Cicer arietinum Ca_04823 I 0.798
Ca_18623 Cicer arietinum Ca_18623 I 0.794
Ca_19383 Cicer arietinum Ca_19383 I 0.783
Ca_19386 Cicer arietinum Ca_19386 I 0.783
chr1.CM0113.620.nc Lotus japonicus chr1.CM0113.620.nc I 0.762
chr5.CM0180.70.nc Lotus japonicus chr5.CM0180.70.nc I 0.802
Ciclev10002354m.g Citrus clementina Ciclev10002354m.g I 0.755
Ciclev10026199m.g Citrus clementina Ciclev10026199m.g I 0.764
Cla009089 Citrullus lanatus Cla009089 I 0.795
Cla019215 Citrullus lanatus Cla019215 I 0.620
Cla023819 Citrullus lanatus Cla023819 I 0.756
Cucsa.111520 Cucumis sativus Cucsa.111520 I 0.620
Cucsa.272210 Cucumis sativus Cucsa.272210 I 0.756
Cucsa.323040 Cucumis sativus Cucsa.323040 I 0.795
estExt_fgenesh1_pg.C_90244 Micromonas pusilla estExt_fgenesh1_pg.C_90244 I 0.703
Eucgr.I02222 Eucalyptus grandis Eucgr.I02222 I 0.768
EuGene.0600010372 Micromonas sp RCC299 EuGene.0600010372 I 0.692
evm.TU.supercontig_26.173 Carica papaya evm.TU.supercontig_26.173 I 0.744
evm.TU.supercontig_6.368 Carica papaya evm.TU.supercontig_6.368 I 0.764
evm.TU.supercontig_65.159 Carica papaya evm.TU.supercontig_65.159 I 0.618
F775_11596 Aegilops tauschii F775_11596 I 0.767
fgenesh1_pg.scaffold_217000007 Physcomitrella patens fgenesh1_pg.scaffold_217000007 I 0.761
gene13035-v1.0-hybrid Fragaria vesca gene13035-v1.0-hybrid I 0.764
gene14025-v1.0-hybrid Fragaria vesca gene14025-v1.0-hybrid I 0.620
gene20491-v1.0-hybrid Fragaria vesca gene20491-v1.0-hybrid I 0.773
GLYMA02G10410 Glycine max GLYMA02G10410 I 0.795
GLYMA04G01830 Glycine max GLYMA04G01830 I 0.768
GLYMA06G01940 Glycine max GLYMA06G01940 I 0.768
GLYMA10G43580 Glycine max GLYMA10G43580 I 0.795
GLYMA18G52491 Glycine max GLYMA18G52491 I 0.795
GLYMA20G23220 Glycine max GLYMA20G23220 I 0.795
Gorai.001G199200 Gossypium raimondii Gorai.001G199200 I 0.764
Gorai.003G002200 Gossypium raimondii Gorai.003G002200 I 0.768
Gorai.004G038300 Gossypium raimondii Gorai.004G038300 I 0.754
Gorai.007G372000 Gossypium raimondii Gorai.007G372000 I 0.754
GRMZM2G038252 Zea mays GRMZM2G038252 D 0.764
GRMZM2G069274 Zea mays GRMZM2G069274 I 0.764
GRMZM5G805026 Zea mays GRMZM5G805026 I 0.764
GSMUA_Achr10G07260_001 Musa acuminata GSMUA_Achr10G07260_001 I 0.764
GSMUA_Achr1G17980_001 Musa acuminata GSMUA_Achr1G17980_001 I 0.764
GSMUA_Achr3G14840_001 Musa acuminata GSMUA_Achr3G14840_001 I 0.730
GSMUA_Achr4G25530_001 Musa acuminata GSMUA_Achr4G25530_001 I 0.799
GSMUA_Achr4G29470_001 Musa acuminata GSMUA_Achr4G29470_001 I 0.705
GSMUA_Achr5G11080_001 Musa acuminata GSMUA_Achr5G11080_001 I 0.762
GSMUA_Achr5G29220_001 Musa acuminata GSMUA_Achr5G29220_001 I 0.626
GSMUA_Achr7G04050_001 Musa acuminata GSMUA_Achr7G04050_001 I 0.742
GSMUA_AchrUn_randomG18610_001 Musa acuminata GSMUA_AchrUn_randomG18610_001 I 0.764
gw1.224.39.1 Physcomitrella patens gw1.224.39.1 I 0.767
gw1.29.10.1 Physcomitrella patens gw1.29.10.1 I 0.767
HB-4 Populus trichocarpa POPTR_0005s10480 I 0.764
HB-4 Arabidopsis lyrata scaffold_700564.1 I 0.764
LjT41B11.90.nd Lotus japonicus LjT41B11.90.nd I 0.783
LPERR01G30370 Leersia perrieri LPERR01G30370 I 0.764
LPERR05G01200 Leersia perrieri LPERR05G01200 I 0.620
Lus10018011.g Linum usitatissimum Lus10018011.g I 0.620
Lus10023561.g Linum usitatissimum Lus10023561.g I 0.752
Lus10040447.g Linum usitatissimum Lus10040447.g I 0.764
Lus10042007.g Linum usitatissimum Lus10042007.g I 0.620
MDP0000163159 Malus domestica MDP0000163159 I 0.620
MDP0000224466 Malus domestica MDP0000224466 I 0.795
MDP0000293200 Malus domestica MDP0000293200 I 0.620
MDP0000304650 Malus domestica MDP0000304650 I 0.764
MDP0000316517 Malus domestica MDP0000316517 I 0.764
MDP0000851699 Malus domestica MDP0000851699 I 0.795
mgf006573m Mimulus guttatus mgf006573m I 0.764
mgf024314m Mimulus guttatus mgf024314m N 0.601
MLOC_56124 Hordeum vulgare MLOC_56124 I 0.767
MTR_1g115315 Medicago truncatula MTR_1g115315 I 0.794
MTR_3g115620 Medicago truncatula MTR_3g115620 I 0.799
MTR_7g023810 Medicago truncatula MTR_7g023810 I 0.730
OB01G44030 Oryza brachyantha OB01G44030 I 0.764
OBART01G35170 Oryza barthii OBART01G35170 I 0.764
OBART05G01300 Oryza barthii OBART05G01300 I 0.620
OGLUM05G01320 Oryza glumaepatula OGLUM05G01320 I 0.620
OLONG_016784 Oryza longistaminata OLONG_016784 I 0.764
OMERI01G32310 Oryza meridionalis OMERI01G32310 I 0.764
OMERI05G01360 Oryza meridionalis OMERI05G01360 I 0.620
ONIVA01G40180 Oryza nivara ONIVA01G40180 I 0.764
ONIVA05G01350 Oryza nivara ONIVA05G01350 I 0.620
OPUNC01G34140 Oryza punctata OPUNC01G34140 I 0.764
OPUNC05G01220 Oryza punctata OPUNC05G01220 I 0.620
orange1.1g022516m.g Citrus sinensis orange1.1g022516m.g I 0.764
orange1.1g026809m.g Citrus sinensis orange1.1g026809m.g I 0.755
ORGLA01G0290300 Oryza glaberrima ORGLA01G0290300 I 0.764
ORUFI01G38500 Oryza rufipogon ORUFI01G38500 I 0.764
ORUFI05G01360 Oryza rufipogon ORUFI05G01360 I 0.620
Pavir.Ea03245 Panicum virgatum Pavir.Ea03245 I 0.764
Pavir.Eb03552 Panicum virgatum Pavir.Eb03552 I 0.764
PDK_20s1363982g001 Phoenix dactylifera PDK_20s1363982g001 I 0.601
PDK_20s1408301g001 Phoenix dactylifera PDK_20s1408301g001 I 0.759
PGSC0003DMG400001565 Solanum tuberosum PGSC0003DMG400001565 I 0.764
PGSC0003DMG400006609 Solanum tuberosum PGSC0003DMG400006609 I 0.619
PGSC0003DMG400025358 Solanum tuberosum PGSC0003DMG400025358 I 0.619
PK07880.1 Cannabis sativa PK07880.1 I 0.752
PK14252.1 Cannabis sativa PK14252.1 I 0.799
Pm000753 Prunus mume Pm000753 I 0.620
Pm022951 Prunus mume Pm022951 I 0.768
Pm026793 Prunus mume Pm026793 I 0.764
POPTR_0002s00980 Populus trichocarpa POPTR_0002s00980 I 0.785
POPTR_0005s27410 Populus trichocarpa POPTR_0005s27410 I 0.784
PRUPE_ppa011225mg Prunus persica PRUPE_ppa011225mg I 0.768
PRUPE_ppa019793mg Prunus persica PRUPE_ppa019793mg I 0.620
PRUPE_ppa021400mg Prunus persica PRUPE_ppa021400mg I 0.764
SapurV1A.0016s0590 Salix purpurea SapurV1A.0016s0590 I 0.785
SapurV1A.0266s0300 Salix purpurea SapurV1A.0266s0300 I 0.784
SapurV1A.1240s0080 Salix purpurea SapurV1A.1240s0080 I 0.764
Sb03g038080 Sorghum bicolor Sb03g038080 I 0.764
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.657
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.657
SELMODRAFT_404178 Selaginella moellendorffii SELMODRAFT_404178 I 0.788
SELMODRAFT_407157 Selaginella moellendorffii SELMODRAFT_407157 I 0.788
SELMODRAFT_417553 Selaginella moellendorffii SELMODRAFT_417553 I 0.601
SELMODRAFT_419270 Selaginella moellendorffii SELMODRAFT_419270 I 0.601
SELMODRAFT_438787 Selaginella moellendorffii SELMODRAFT_438787 I 0.739
SELMODRAFT_451353 Selaginella moellendorffii SELMODRAFT_451353 I 0.679
SELMODRAFT_451355 Selaginella moellendorffii SELMODRAFT_451355 I 0.739
SELMODRAFT_84885 Selaginella moellendorffii SELMODRAFT_84885 I 0.677
Si002508m.g Setaria italica Si002508m.g I 0.764
Solyc02g082670.2 Solanum lycopersicum Solyc02g082670.2 I 0.764
Solyc11g072770.1 Solanum lycopersicum Solyc11g072770.1 I 0.619
TCM_000062 Theobroma cacao TCM_000062 I 0.764
TCM_034409 Theobroma cacao TCM_034409 I 0.756
Thhalv10008824m.g Eutrema salsugineum Thhalv10008824m.g I 0.760
Thhalv10009917m.g Eutrema salsugineum Thhalv10009917m.g I 0.739
Thhalv10022017m.g Eutrema salsugineum Thhalv10022017m.g I 0.606
Thhalv10025989m.g Eutrema salsugineum Thhalv10025989m.g I 0.764
TRAES3BF057600060CFD_g Triticum aestivum TRAES3BF057600060CFD_g I 0.767
TRAES3BF091200090CFD_g Triticum aestivum TRAES3BF091200090CFD_g I 0.767
TRAES3BF091200100CFD_g Triticum aestivum TRAES3BF091200100CFD_g I 0.767
Traes_3AL_D0053C177 Triticum aestivum Traes_3AL_D0053C177 I 0.767
Traes_3AS_9079D6B71 Triticum aestivum Traes_3AS_9079D6B71 I 0.745
Traes_3DL_6B1815F7D Triticum aestivum Traes_3DL_6B1815F7D I 0.767
Traes_3DS_97BBFFA03 Triticum aestivum Traes_3DS_97BBFFA03 I 0.767
TRIUR3_23636 Triticum urartu TRIUR3_23636 I 0.767
VIT_04s0044g00150 Vitis vinifera VIT_04s0044g00150 I 0.752
VIT_04s0044g00160 Vitis vinifera VIT_04s0044g00160 I 0.695
VIT_18s0122g01140 Vitis vinifera VIT_18s0122g01140 I 0.795
WOX1 Populus trichocarpa POPTR_0010s12150 I 0.601
WOX10 Arabidopsis thaliana AT1G20710 I 0.724
WOX10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001761 I 0.742
WOX13 Arabidopsis thaliana AT4G35550 D 0.764
WOX14 Arabidopsis thaliana AT1G20700 I 0.740
WOX14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001881 I 0.740
WOX2 Oryza indica BGIOSGA019069 I 0.620
WOX2 Oryza sativa OS05G0118700 I 0.620
WOX5 Arabidopsis thaliana AT3G11260 I 0.606
WOX5 Arabidopsis lyrata fgenesh2_kg.3__1167__AT3G11260.1 I 0.606
WOX8 Oryza sativa OS01G0818400 I 0.764