ALUE_0001129001 (Ascaris lumbricoides)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 ALUE_0001129001 T232843_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.834 0.912
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.834 0.912
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.834 0.912
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.834 0.912
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.834 0.877
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.834 0.877
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.834 0.877
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.834 0.877
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.834 0.877
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.833 0.895
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.833 0.895
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.833 0.895
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.833 0.895
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.833 0.895
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.833 0.895
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.833 0.877
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.827 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ALUE_0001129001-mRNA-1 Homeodomain 110 166

Links

Other Homeodomain family TFs
Other Ascaris lumbricoides TFs

297 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29584.m000234 Ricinus communis 29584.m000234 I
29680.m001678 Ricinus communis 29680.m001678 I
29895.m000321 Ricinus communis 29895.m000321 I
29900.m001561 Ricinus communis 29900.m001561 I
AC233933.1_FG001 Zea mays AC233933.1_FG001 I
AMTR_s00009p00143340 Amborella trichopoda AMTR_s00009p00143340 I
Aquca_017_00711 Aquilegia coerulea Aquca_017_00711 I
Aquca_034_00376 Aquilegia coerulea Aquca_034_00376 I
ATERF2 Arabidopsis lyrata fgenesh2_kg.8__70__AT5G47220.1 I
BGIOSGA011868 Oryza indica BGIOSGA011868 I
BGIOSGA024428 Oryza indica BGIOSGA024428 I
BGIOSGA024429 Oryza indica BGIOSGA024429 I
BGIOSGA031313 Oryza indica BGIOSGA031313 I
BRADI1G00670 Brachypodium distachyon BRADI1G00670 I
BRADI4G38930 Brachypodium distachyon BRADI4G38930 I
cassava22677.valid.m1 Manihot esculenta cassava22677.valid.m1 I
cassava37347.valid.m1 Manihot esculenta cassava37347.valid.m1 I
cassava38166.valid.m1 Manihot esculenta cassava38166.valid.m1 I
cassava38509.m1 Manihot esculenta cassava38509.m1 I
cassava47179.m1 Manihot esculenta cassava47179.m1 I
cassava632.valid.m1 Manihot esculenta cassava632.valid.m1 I
Ca_07754 Cicer arietinum Ca_07754 I
Ca_12081 Cicer arietinum Ca_12081 I
Ca_12219 Cicer arietinum Ca_12219 I
Ca_12221 Cicer arietinum Ca_12221 I
Ca_23170 Cicer arietinum Ca_23170 I
chr1.CM0295.160.nd Lotus japonicus chr1.CM0295.160.nd I
chr5.CM0341.90.nc Lotus japonicus chr5.CM0341.90.nc I
chr6.CM1613.110.nc Lotus japonicus chr6.CM1613.110.nc I
Ciclev10005820m.g Citrus clementina Ciclev10005820m.g I
Ciclev10021622m.g Citrus clementina Ciclev10021622m.g I
Ciclev10024142m.g Citrus clementina Ciclev10024142m.g I
Cla006080 Citrullus lanatus Cla006080 I
Cla007697 Citrullus lanatus Cla007697 I
Cla021850 Citrullus lanatus Cla021850 I
Cucsa.053560 Cucumis sativus Cucsa.053560 I
Cucsa.062330 Cucumis sativus Cucsa.062330 I
Cucsa.255340 Cucumis sativus Cucsa.255340 I
Cucsa.388530 Cucumis sativus Cucsa.388530 I
ERF094 Arabidopsis thaliana AT1G06160 D
Eucgr.H03088 Eucalyptus grandis Eucgr.H03088 I
Eucgr.K03266 Eucalyptus grandis Eucgr.K03266 I
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I
evm.TU.supercontig_44.71 Carica papaya evm.TU.supercontig_44.71 I
F775_01237 Aegilops tauschii F775_01237 N
F775_22020 Aegilops tauschii F775_22020 I
F775_22331 Aegilops tauschii F775_22331 I
F775_22648 Aegilops tauschii F775_22648 N
F775_25471 Aegilops tauschii F775_25471 I
F775_52314 Aegilops tauschii F775_52314 I
gene08077-v1.0-hybrid Fragaria vesca gene08077-v1.0-hybrid I
gene11442-v1.0-hybrid Fragaria vesca gene11442-v1.0-hybrid I
GLYMA02G00870 Glycine max GLYMA02G00870 I
GLYMA03G31940 Glycine max GLYMA03G31940 I
GLYMA10G00980 Glycine max GLYMA10G00980 I
GLYMA10G04170 Glycine max GLYMA10G04170 I
GLYMA10G04210 Glycine max GLYMA10G04210 I
GLYMA10G33060 Glycine max GLYMA10G33060 I
GLYMA13G18340 Glycine max GLYMA13G18340 I
GLYMA13G18350 Glycine max GLYMA13G18350 I
GLYMA13G18370 Glycine max GLYMA13G18370 I
GLYMA13G18390 Glycine max GLYMA13G18390 I
GLYMA13G18410 Glycine max GLYMA13G18410 I
GLYMA19G34696 Glycine max GLYMA19G34696 I
GLYMA20G34570 Glycine max GLYMA20G34570 I
Gorai.001G176800 Gossypium raimondii Gorai.001G176800 I
Gorai.001G252600 Gossypium raimondii Gorai.001G252600 I
Gorai.001G253000 Gossypium raimondii Gorai.001G253000 I
Gorai.001G253100 Gossypium raimondii Gorai.001G253100 I
Gorai.004G057000 Gossypium raimondii Gorai.004G057000 I
Gorai.005G049300 Gossypium raimondii Gorai.005G049300 I
Gorai.007G145800 Gossypium raimondii Gorai.007G145800 I
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I
Gorai.011G173000 Gossypium raimondii Gorai.011G173000 I
Gorai.013G186700 Gossypium raimondii Gorai.013G186700 I
Gorai.013G186800 Gossypium raimondii Gorai.013G186800 I
GRMZM2G073258 Zea mays GRMZM2G073258 I
GRMZM2G123119 Zea mays GRMZM2G123119 I
GRMZM2G379652 Zea mays GRMZM2G379652 I
GRMZM2G381441 Zea mays GRMZM2G381441 I
GRMZM2G478965 Zea mays GRMZM2G478965 I
GRMZM5G837876 Zea mays GRMZM5G837876 I
GSMUA_Achr11G22020_001 Musa acuminata GSMUA_Achr11G22020_001 I
GSMUA_Achr1G01380_001 Musa acuminata GSMUA_Achr1G01380_001 I
GSMUA_Achr3G15550_001 Musa acuminata GSMUA_Achr3G15550_001 I
GSMUA_Achr4G05520_001 Musa acuminata GSMUA_Achr4G05520_001 I
GSMUA_Achr4G12060_001 Musa acuminata GSMUA_Achr4G12060_001 I
GSMUA_Achr5G19610_001 Musa acuminata GSMUA_Achr5G19610_001 I
GSMUA_Achr6G27040_001 Musa acuminata GSMUA_Achr6G27040_001 I
GSMUA_AchrUn_randomG10760_001 Musa acuminata GSMUA_AchrUn_randomG10760_001 I
LjSGA_017232.1 Lotus japonicus LjSGA_017232.1 I
LPERR03G03540 Leersia perrieri LPERR03G03540 I
LPERR07G06830 Leersia perrieri LPERR07G06830 I
LPERR09G16380 Leersia perrieri LPERR09G16380 I
Lus10011829.g Linum usitatissimum Lus10011829.g I
Lus10021193.g Linum usitatissimum Lus10021193.g I
Lus10021873.g Linum usitatissimum Lus10021873.g I
Lus10022015.g Linum usitatissimum Lus10022015.g I
Lus10022935.g Linum usitatissimum Lus10022935.g I
Lus10042557.g Linum usitatissimum Lus10042557.g I
MDP0000127134 Malus domestica MDP0000127134 I
MDP0000167207 Malus domestica MDP0000167207 I
MDP0000235313 Malus domestica MDP0000235313 I
MDP0000246808 Malus domestica MDP0000246808 I
MDP0000322279 Malus domestica MDP0000322279 I
MDP0000447570 Malus domestica MDP0000447570 I
MDP0000855671 Malus domestica MDP0000855671 I
mgf018693m Mimulus guttatus mgf018693m I
mgf022372m Mimulus guttatus mgf022372m I
mgf023779m Mimulus guttatus mgf023779m I
MLOC_43207 Hordeum vulgare MLOC_43207 I
MLOC_77420 Hordeum vulgare MLOC_77420 I
MLOC_80197 Hordeum vulgare MLOC_80197 I
MTR_1g043350 Medicago truncatula MTR_1g043350 I
MTR_1g069940 Medicago truncatula MTR_1g069940 I
MTR_1g069945 Medicago truncatula MTR_1g069945 I
MTR_1g070000 Medicago truncatula MTR_1g070000 I
MTR_1g070015 Medicago truncatula MTR_1g070015 I
MTR_1g070020 Medicago truncatula MTR_1g070020 I
MTR_1g070045 Medicago truncatula MTR_1g070045 I
MTR_1g074370 Medicago truncatula MTR_1g074370 I
MTR_7g096780 Medicago truncatula MTR_7g096780 I
MTR_7g096830 Medicago truncatula MTR_7g096830 I
OB09G27130 Oryza brachyantha OB09G27130 I
OBART03G03890 Oryza barthii OBART03G03890 I
OBART07G11330 Oryza barthii OBART07G11330 I
OBART07G11340 Oryza barthii OBART07G11340 I
OBART09G20410 Oryza barthii OBART09G20410 I
OGLUM03G03790 Oryza glumaepatula OGLUM03G03790 I
OGLUM07G10870 Oryza glumaepatula OGLUM07G10870 I
OGLUM07G10880 Oryza glumaepatula OGLUM07G10880 I
OGLUM09G21150 Oryza glumaepatula OGLUM09G21150 I
OLONG_005597 Oryza longistaminata OLONG_005597 I
OLONG_008277 Oryza longistaminata OLONG_008277 I
ONIVA01G50300 Oryza nivara ONIVA01G50300 I
ONIVA03G03670 Oryza nivara ONIVA03G03670 I
ONIVA07G09500 Oryza nivara ONIVA07G09500 I
ONIVA09G20840 Oryza nivara ONIVA09G20840 I
OPUNC03G03600 Oryza punctata OPUNC03G03600 I
OPUNC03G38860 Oryza punctata OPUNC03G38860 I
OPUNC07G10310 Oryza punctata OPUNC07G10310 I
OPUNC09G18690 Oryza punctata OPUNC09G18690 I
orange1.1g039409m.g Citrus sinensis orange1.1g039409m.g I
orange1.1g042174m.g Citrus sinensis orange1.1g042174m.g I
orange1.1g047387m.g Citrus sinensis orange1.1g047387m.g I
ORGLA03G0036700 Oryza glaberrima ORGLA03G0036700 I
ORGLA07G0097000 Oryza glaberrima ORGLA07G0097000 I
ORGLA07G0097100 Oryza glaberrima ORGLA07G0097100 I
ORUFI03G03630 Oryza rufipogon ORUFI03G03630 I
ORUFI07G11580 Oryza rufipogon ORUFI07G11580 I
ORUFI07G11590 Oryza rufipogon ORUFI07G11590 I
ORUFI09G22040 Oryza rufipogon ORUFI09G22040 I
OS03G0150200 Oryza sativa OS03G0150200 I
OS07G0410700 Oryza sativa OS07G0410700 I
OS09G0572000 Oryza sativa OS09G0572000 I
Pavir.Ba02374 Panicum virgatum Pavir.Ba02374 I
Pavir.Ba02781 Panicum virgatum Pavir.Ba02781 I
Pavir.Ba03491 Panicum virgatum Pavir.Ba03491 I
Pavir.Bb00652 Panicum virgatum Pavir.Bb00652 I
Pavir.Bb00653 Panicum virgatum Pavir.Bb00653 I
Pavir.Bb00962 Panicum virgatum Pavir.Bb00962 I
Pavir.Ga02734 Panicum virgatum Pavir.Ga02734 N
Pavir.Ha00304 Panicum virgatum Pavir.Ha00304 I
Pavir.Ha00307 Panicum virgatum Pavir.Ha00307 I
Pavir.Ha01200 Panicum virgatum Pavir.Ha01200 I
Pavir.Ha01264 Panicum virgatum Pavir.Ha01264 I
Pavir.Hb01074 Panicum virgatum Pavir.Hb01074 I
Pavir.Hb01232 Panicum virgatum Pavir.Hb01232 N
Pavir.Hb01336 Panicum virgatum Pavir.Hb01336 I
Pavir.Ia00066 Panicum virgatum Pavir.Ia00066 I
Pavir.Ib03413 Panicum virgatum Pavir.Ib03413 I
Pavir.J01078 Panicum virgatum Pavir.J01078 I
Pavir.J16149 Panicum virgatum Pavir.J16149 I
Pavir.J17768 Panicum virgatum Pavir.J17768 I
Pavir.J28684 Panicum virgatum Pavir.J28684 I
Pavir.J30299 Panicum virgatum Pavir.J30299 I
Pavir.J37124 Panicum virgatum Pavir.J37124 I
Pm009382 Prunus mume Pm009382 I
Pm020604 Prunus mume Pm020604 I
POPTR_0002s04020 Populus trichocarpa POPTR_0002s04020 I
POPTR_0005s24460 Populus trichocarpa POPTR_0005s24460 I
POPTR_0008s16610 Populus trichocarpa POPTR_0008s16610 I
POPTR_0010s08300 Populus trichocarpa POPTR_0010s08300 I
POPTR_0011s06010 Populus trichocarpa POPTR_0011s06010 I
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I
PRUPE_ppa023839mg Prunus persica PRUPE_ppa023839mg I
PRUPE_ppa024173mg Prunus persica PRUPE_ppa024173mg I
SapurV1A.0006s0840 Salix purpurea SapurV1A.0006s0840 I
SapurV1A.0006s0850 Salix purpurea SapurV1A.0006s0850 I
SapurV1A.0007s0980 Salix purpurea SapurV1A.0007s0980 I
SapurV1A.0021s0980 Salix purpurea SapurV1A.0021s0980 I
SapurV1A.0132s0310 Salix purpurea SapurV1A.0132s0310 I
SapurV1A.0233s0360 Salix purpurea SapurV1A.0233s0360 I
SapurV1A.0233s0370 Salix purpurea SapurV1A.0233s0370 I
SapurV1A.0270s0240 Salix purpurea SapurV1A.0270s0240 I
SapurV1A.0816s0060 Salix purpurea SapurV1A.0816s0060 I
SapurV1A.2490s0030 Salix purpurea SapurV1A.2490s0030 I
SapurV1A.3984s0010 Salix purpurea SapurV1A.3984s0010 I
SapurV1A.4312s0010 Salix purpurea SapurV1A.4312s0010 I
Sb01g000352 Sorghum bicolor Sb01g000352 I
Sb02g005810 Sorghum bicolor Sb02g005810 I
Sb02g005840 Sorghum bicolor Sb02g005840 I
Sb02g012630 Sorghum bicolor Sb02g012630 I
Sb05g022110 Sorghum bicolor Sb05g022110 I
Sb05g026843 Sorghum bicolor Sb05g026843 I
Si027485m.g Setaria italica Si027485m.g I
Si028088m.g Setaria italica Si028088m.g I
Si028135m.g Setaria italica Si028135m.g I
Si028219m.g Setaria italica Si028219m.g I
Si031946m.g Setaria italica Si031946m.g I
Si032815m.g Setaria italica Si032815m.g I
Si033089m.g Setaria italica Si033089m.g I
Si038911m.g Setaria italica Si038911m.g I
TCM_004052 Theobroma cacao TCM_004052 I
TCM_004056 Theobroma cacao TCM_004056 I
TCM_020871 Theobroma cacao TCM_020871 I
TCM_026233 Theobroma cacao TCM_026233 I
TCM_026234 Theobroma cacao TCM_026234 I
Thhalv10008518m.g Eutrema salsugineum Thhalv10008518m.g I
Traes_2AL_9E90C2488 Triticum aestivum Traes_2AL_9E90C2488 N
Traes_2BL_0B09B840B Triticum aestivum Traes_2BL_0B09B840B I
Traes_2BL_304012B04 Triticum aestivum Traes_2BL_304012B04 N
Traes_2BL_3A3353970 Triticum aestivum Traes_2BL_3A3353970 N
Traes_2BS_0EE99D4A6 Triticum aestivum Traes_2BS_0EE99D4A6 I
Traes_4AL_1A0E673DC Triticum aestivum Traes_4AL_1A0E673DC I
Traes_4AL_5E86DF14B Triticum aestivum Traes_4AL_5E86DF14B I
Traes_4AS_9450AD3F4 Triticum aestivum Traes_4AS_9450AD3F4 I
Traes_4BL_39AE2989D Triticum aestivum Traes_4BL_39AE2989D I
Traes_4DL_CB92B5ABB Triticum aestivum Traes_4DL_CB92B5ABB I
Traes_4DS_9C01B536B Triticum aestivum Traes_4DS_9C01B536B I
Traes_5BL_4E044468C Triticum aestivum Traes_5BL_4E044468C I
Traes_5DL_53D8DF9CD Triticum aestivum Traes_5DL_53D8DF9CD I
TRIUR3_16508 Triticum urartu TRIUR3_16508 I
TRIUR3_29784 Triticum urartu TRIUR3_29784 I
VIT_05s0049g00510 Vitis vinifera VIT_05s0049g00510 I
VIT_07s0005g03230 Vitis vinifera VIT_07s0005g03230 I
VIT_07s0005g03260 Vitis vinifera VIT_07s0005g03260 I
VIT_07s0005g03270 Vitis vinifera VIT_07s0005g03270 I
VIT_14s0081g00730 Vitis vinifera VIT_14s0081g00730 I