ORGLA04G0190900 (Oryza glaberrima)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 ORGLA04G0190900 T241524_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.502 0.816
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.502 0.816
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.462 0.747
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.462 0.747
HSFB4
M06936_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFB4_col_a 		0.454 0.736
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.441 0.690
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.441 0.690
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.406 0.632
HSFC1
M00868_2.00 		Arabidopsis thaliana
NDTCBNNN
NNNVGAHN		 PBM
Franco-Zorrilla et al.(2014)
HSFC1 		0.388 0.598
HSFC1
M06943_2.00 		Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFC1_col_a 		0.388 0.598
HSFC1
M06944_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a 		0.388 0.598
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.383 0.644
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.383 0.644
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.382 0.632
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.382 0.632
HSFA6A
M06950_2.00 		Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_col_a 		0.380 0.609
HSFA6A
M06951_2.00 		Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a 		0.380 0.609
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.361 0.644
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.361 0.644
HSF1
M03329_2.00 		Homo sapiens
GAANVTTCBVGAA
TTCBVGAABNTTC		 SELEX
Jolma et al.(2013)
HSF1_1 		0.342 0.529
HSF1
M03330_2.00 		Homo sapiens
GAANRTTCBAGAA
TTCTVGAAYNTTC		 SELEX
Jolma et al.(2013)
HSF1_2 		0.342 0.529
HSF1
M05523_2.00 		Homo sapiens
VGAABVTTCBVGAWN
NWTCBVGAABVTTCB		 SELEX
Yin et al.(2017)
HSF1_eDBD_HT-SELEX 		0.342 0.529
HSF1
M05525_2.00 		Homo sapiens
VGAANRTTCKVGAAN
NTTCBMGAAYNTTCB		 SELEX
Yin et al.(2017)
HSF1_FL_HT-SELEX 		0.342 0.529
HSF1
M07977_2.00 		Homo sapiens
GDCSYGGGTTCRADYCCC
GGGRHTYGAACCCRSGHC		 ChIP-seq
Gerstein et al.(2012)
HepG2_HSF1_Stanford 		0.342 0.529
HSF1
M09230_2.00 		Homo sapiens
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN		 Misc
Kulakovskiy et al.(2013)
HSF1_HUMAN.H11MO.0.A 		0.342 0.529
Hsf1
M09232_2.00 		Mus musculus
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN		 Misc
Kulakovskiy et al.(2013)
HSF1_MOUSE.H11MO.0.A 		0.342 0.529
HSF1
M09592_2.00 		Homo sapiens
NNBBCYRGAANNTTCYRGVV
BBCYRGAANNTTCYRGVVNN		 Misc
Heinz et al.(2010)
HepG2-HSF1_GSE31477 		0.342 0.529
Hsf1
M09593_2.00 		Mus musculus
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN		 Misc
Heinz et al.(2010)
Striatum-HSF1_GSE38000 		0.342 0.529
HSF1
M10863_2.00 		Homo sapiens
NGAAHNTTCY
RGAANDTTCN		 Transfac
Matys et al.(2006)
V$HSF1_01 		0.342 0.529
HSF1
M10864_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q5_01 		0.342 0.529
HSF1
M10865_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q5 		0.342 0.529
HSF1
M10866_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q6_01 		0.342 0.529
HSF1
M10867_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q6 		0.342 0.529
HSF1
M10868_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF_Q6 		0.342 0.529
HSF1
M05524_2.00 		Homo sapiens
RGAANRTTCYRGAWN
NWTCYRGAAYNTTCY		 SELEX
Yin et al.(2017)
HSF1_eDBD_Methyl-HT-SELEX 		0.342 0.529
HSF1
M05526_2.00 		Homo sapiens
RGAANVTTCYRGAWN
NWTCYRGAABNTTCY		 SELEX
Yin et al.(2017)
HSF1_FL_Methyl-HT-SELEX 		0.342 0.529
HSF4
M03325_2.00 		Homo sapiens
GAANNTTCBVGAA
TTCBVGAANNTTC		 SELEX
Jolma et al.(2013)
HSF4_1 		0.332 0.517
HSF4
M05509_2.00 		Homo sapiens
VGAABVTTCKVGAAN
NTTCBMGAABVTTCB		 SELEX
Yin et al.(2017)
HSF4_eDBD_HT-SELEX 		0.332 0.517
HSF4
M10862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF4_Q3 		0.332 0.517
HSF4
M05510_2.00 		Homo sapiens
RGAABVWDCYRGAWN
NWTCYRGHWBVTTCY		 SELEX
Yin et al.(2017)
HSF4_eDBD_Methyl-HT-SELEX 		0.332 0.517
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA04G0190900.1 HSF 11 101

Links

Other HSF family TFs
Other Oryza glaberrima TFs

1519 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29950.m001171 Ricinus communis 29950.m001171 I
ANAC087 Arabidopsis thaliana AT5G18270 D
ANAC087 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001462 I
ATNAC3 Arabidopsis lyrata fgenesh2_kg.5__665__AT3G29035.1 I
BGIOSGA001578 Oryza indica BGIOSGA001578 I
BGIOSGA002597 Oryza indica BGIOSGA002597 I
Bo2g015440 Brassica oleracea Bo2g015440 I
Bo3g013050 Brassica oleracea Bo3g013050 I
Bo9g175670 Brassica oleracea Bo9g175670 I
Bostr.26527s0381 Boechera stricta Bostr.26527s0381 I
Bra006449 Brassica rapa Bra006449 I
Bra023669 Brassica rapa Bra023669 I
Bra028435 Brassica rapa Bra028435 I
Bra036223 Brassica rapa Bra036223 I
Cagra.0906s0022 Capsella grandiflora Cagra.0906s0022 I
Carubv10001373m.g Capsella rubella Carubv10001373m.g I
Carubv10017737m.g Capsella rubella Carubv10017737m.g I
cassava25877.m1 Manihot esculenta cassava25877.m1 I
cassava35698.valid.m1 Manihot esculenta cassava35698.valid.m1 I
Ca_08255 Cicer arietinum Ca_08255 I
chr1.CM0104.260.nc Lotus japonicus chr1.CM0104.260.nc I
Ciclev10020549m.g Citrus clementina Ciclev10020549m.g I
Cla010484 Citrullus lanatus Cla010484 I
Cla012339 Citrullus lanatus Cla012339 I
Cucsa.002980 Cucumis sativus Cucsa.002980 I
Eucgr.A02074 Eucalyptus grandis Eucgr.A02074 I
Eucgr.K01472 Eucalyptus grandis Eucgr.K01472 I
evm.TU.supercontig_594.1 Carica papaya evm.TU.supercontig_594.1 I
F775_13622 Aegilops tauschii F775_13622 N
F775_16032 Aegilops tauschii F775_16032 I
F775_24687 Aegilops tauschii F775_24687 I
F775_25866 Aegilops tauschii F775_25866 N
F775_25867 Aegilops tauschii F775_25867 N
F775_29497 Aegilops tauschii F775_29497 I
GLYMA02G07760 Glycine max GLYMA02G07760 I
GLYMA16G04720 Glycine max GLYMA16G04720 I
GLYMA16G26810 Glycine max GLYMA16G26810 I
GLYMA19G28515 Glycine max GLYMA19G28515 I
Gorai.007G267700 Gossypium raimondii Gorai.007G267700 I
Gorai.013G118000 Gossypium raimondii Gorai.013G118000 I
GSMUA_Achr3G09520_001 Musa acuminata GSMUA_Achr3G09520_001 I
GSMUA_Achr5G07600_001 Musa acuminata GSMUA_Achr5G07600_001 I
GSMUA_Achr7G18330_001 Musa acuminata GSMUA_Achr7G18330_001 I
GSMUA_Achr9G16920_001 Musa acuminata GSMUA_Achr9G16920_001 I
Lus10003435.g Linum usitatissimum Lus10003435.g I
Lus10026879.g Linum usitatissimum Lus10026879.g I
MDP0000129335 Malus domestica MDP0000129335 I
MDP0000184069 Malus domestica MDP0000184069 I
MDP0000232050 Malus domestica MDP0000232050 I
MLOC_58272 Hordeum vulgare MLOC_58272 N
MLOC_72737 Hordeum vulgare MLOC_72737 I
MTR_6g032770 Medicago truncatula MTR_6g032770 I
MTR_7g085260 Medicago truncatula MTR_7g085260 I
NAC59 Arabidopsis thaliana AT3G29035 D
OB01G10300 Oryza brachyantha OB01G10300 I
OBART01G00360 Oryza barthii OBART01G00360 I
OBART01G16620 Oryza barthii OBART01G16620 I
OGLUM01G00350 Oryza glumaepatula OGLUM01G00350 I
OGLUM01G19440 Oryza glumaepatula OGLUM01G19440 I
OLONG_022415 Oryza longistaminata OLONG_022415 I
OMERI01G15230 Oryza meridionalis OMERI01G15230 I
ONIVA01G00280 Oryza nivara ONIVA01G00280 I
ONIVA01G18370 Oryza nivara ONIVA01G18370 I
orange1.1g016542m.g Citrus sinensis orange1.1g016542m.g I
ORGLA12G0187900 Oryza glaberrima ORGLA12G0187900 I
ORUFI01G00320 Oryza rufipogon ORUFI01G00320 I
ORUFI01G18470 Oryza rufipogon ORUFI01G18470 I
OS01G0104500 Oryza sativa OS01G0104500 I
OS01G0393100 Oryza sativa OS01G0393100 I
Pavir.Ba02955 Panicum virgatum Pavir.Ba02955 I
Pavir.Bb02033 Panicum virgatum Pavir.Bb02033 I
Pavir.Eb00839 Panicum virgatum Pavir.Eb00839 I
Pavir.Eb00976 Panicum virgatum Pavir.Eb00976 I
Pavir.J27836 Panicum virgatum Pavir.J27836 N
PGSC0003DMG400001338 Solanum tuberosum PGSC0003DMG400001338 I
PK26741.1 Cannabis sativa PK26741.1 I
Pm025307 Prunus mume Pm025307 I
POPTR_0013s05110 Populus trichocarpa POPTR_0013s05110 I
POPTR_0019s04710 Populus trichocarpa POPTR_0019s04710 I
PRUPE_ppa005770mg Prunus persica PRUPE_ppa005770mg I
PRUPE_ppa007883mg Prunus persica PRUPE_ppa007883mg I
SapurV1A.0308s0280 Salix purpurea SapurV1A.0308s0280 I
SapurV1A.0867s0130 Salix purpurea SapurV1A.0867s0130 I
SapurV1A.1196s0010 Salix purpurea SapurV1A.1196s0010 I
SapurV1A.2283s0010 Salix purpurea SapurV1A.2283s0010 I
Sb03g008860 Sorghum bicolor Sb03g008860 N
Si002003m.g Setaria italica Si002003m.g N
Si002074m.g Setaria italica Si002074m.g I
Si030284m.g Setaria italica Si030284m.g N
Solyc02g088180.2 Solanum lycopersicum Solyc02g088180.2 I
TCM_018621 Theobroma cacao TCM_018621 I
TCM_026028 Theobroma cacao TCM_026028 I
Thhalv10004583m.g Eutrema salsugineum Thhalv10004583m.g I
Thhalv10014060m.g Eutrema salsugineum Thhalv10014060m.g I
Thhalv10027874m.g Eutrema salsugineum Thhalv10027874m.g I
TRAES3BF020100120CFD_g Triticum aestivum TRAES3BF020100120CFD_g I
Traes_3AS_4220612F3 Triticum aestivum Traes_3AS_4220612F3 I
Traes_3DS_3520D86D7 Triticum aestivum Traes_3DS_3520D86D7 N
Traes_3DS_930F3B5AD Triticum aestivum Traes_3DS_930F3B5AD I
Traes_5AL_373E730BB Triticum aestivum Traes_5AL_373E730BB I
Traes_7AL_38B48B7B2 Triticum aestivum Traes_7AL_38B48B7B2 N
Traes_7AL_C8835D919 Triticum aestivum Traes_7AL_C8835D919 N
Traes_7AS_7A7A0CF5B Triticum aestivum Traes_7AS_7A7A0CF5B I
Traes_7AS_CB673ED0C Triticum aestivum Traes_7AS_CB673ED0C N
Traes_7BL_2782B04F1 Triticum aestivum Traes_7BL_2782B04F1 N
Traes_7BS_BA1111780 Triticum aestivum Traes_7BS_BA1111780 N
Traes_7DL_2DE6C6D33 Triticum aestivum Traes_7DL_2DE6C6D33 N
Traes_7DS_2452C1E32 Triticum aestivum Traes_7DS_2452C1E32 I
TRIUR3_00447 Triticum urartu TRIUR3_00447 N
TRIUR3_11787 Triticum urartu TRIUR3_11787 N
TRIUR3_23644 Triticum urartu TRIUR3_23644 I
TRIUR3_25136 Triticum urartu TRIUR3_25136 I
VIT_08s0007g07640 Vitis vinifera VIT_08s0007g07640 I
VIT_14s0108g01070 Vitis vinifera VIT_14s0108g01070 I