gene14058-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene14058-v1.0-hybrid T258328_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL91
M10922_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G66656_01 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna14058.1-v1.0-hybrid MADS box 10 57

Links

Other MADS box family TFs
Other Fragaria vesca TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29693.m002039 Ricinus communis 29693.m002039 I 0.771
AGL29 Arabidopsis lyrata fgenesh2_kg.4__1464__AT2G34440.1 I 0.792
AGL29 Arabidopsis thaliana AT2G34440 I 0.792
AGL91 Arabidopsis thaliana AT3G66656 D 0.771
AGL91 Arabidopsis lyrata fgenesh2_kg.3__679__AT3G66656.1 I 0.771
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
Bo3g060720 Brassica oleracea Bo3g060720 I 0.708
Bo4g157220 Brassica oleracea Bo4g157220 N 0.708
Bo4g182590 Brassica oleracea Bo4g182590 I 0.771
Bostr.22252s0371 Boechera stricta Bostr.22252s0371 I 0.750
Bostr.23794s0666 Boechera stricta Bostr.23794s0666 I 0.792
Bra001209 Brassica rapa Bra001209 I 0.708
Bra021910 Brassica rapa Bra021910 I 0.771
Cagra.0133s0015 Capsella grandiflora Cagra.0133s0015 I 0.771
Cagra.7352s0007 Capsella grandiflora Cagra.7352s0007 I 0.792
Carubv10014761m.g Capsella rubella Carubv10014761m.g I 0.771
Carubv10025656m.g Capsella rubella Carubv10025656m.g I 0.792
cassava10519.m1 Manihot esculenta cassava10519.m1 I 0.792
Ca_05023 Cicer arietinum Ca_05023 I 0.750
Ca_24185 Cicer arietinum Ca_24185 I 0.729
chr4.LjT16L01.50.nd Lotus japonicus chr4.LjT16L01.50.nd I 0.708
Ciclev10017472m.g Citrus clementina Ciclev10017472m.g I 0.833
Cla019897 Citrullus lanatus Cla019897 N 0.771
Cucsa.212320 Cucumis sativus Cucsa.212320 N 0.771
Eucgr.D00311 Eucalyptus grandis Eucgr.D00311 N 0.708
Eucgr.D00312 Eucalyptus grandis Eucgr.D00312 N 0.708
Eucgr.D00313 Eucalyptus grandis Eucgr.D00313 N 0.708
evm.TU.supercontig_25.93 Carica papaya evm.TU.supercontig_25.93 I 0.792
gene30567-v1.0-hybrid Fragaria vesca gene30567-v1.0-hybrid I 0.917
GLYMA05G35811 Glycine max GLYMA05G35811 I 0.729
GLYMA08G03830 Glycine max GLYMA08G03830 I 0.729
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I 0.792
LjSGA_017605.1 Lotus japonicus LjSGA_017605.1 I 0.750
Lus10016563.g Linum usitatissimum Lus10016563.g N 0.729
Lus10040832.g Linum usitatissimum Lus10040832.g N 0.750
MDP0000120467 Malus domestica MDP0000120467 N 0.750
MDP0000274606 Malus domestica MDP0000274606 N 0.792
MTR_1g047550 Medicago truncatula MTR_1g047550 I 0.729
MTR_1g054265 Medicago truncatula MTR_1g054265 I 0.750
MTR_1g063160 Medicago truncatula MTR_1g063160 I 0.708
MTR_8g051580 Medicago truncatula MTR_8g051580 I 0.750
MTR_8g079502 Medicago truncatula MTR_8g079502 I 0.729
orange1.1g037442m.g Citrus sinensis orange1.1g037442m.g I 0.833
PDK_20s1551551g001 Phoenix dactylifera PDK_20s1551551g001 I 0.729
Pm030655 Prunus mume Pm030655 I 0.812
POPTR_0004s13600 Populus trichocarpa POPTR_0004s13600 N 0.771
PRUPE_ppa021886mg Prunus persica PRUPE_ppa021886mg N 0.708
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.812
SapurV1A.0560s0040 Salix purpurea SapurV1A.0560s0040 N 0.750
SapurV1A.2238s0010 Salix purpurea SapurV1A.2238s0010 N 0.750
TCM_006325 Theobroma cacao TCM_006325 N 0.708
TCM_029518 Theobroma cacao TCM_029518 I 0.833
Thhalv10017825m.g Eutrema salsugineum Thhalv10017825m.g I 0.771
Thhalv10022154m.g Eutrema salsugineum Thhalv10022154m.g I 0.771