Bra033027 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra033027 T268072_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.807 0.892
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.807 0.892
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra033027.1-P Myb 232 278
Bra033027.1-P Myb 284 329

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29917.m001977 Ricinus communis 29917.m001977 I 0.676
Bo2g144970 Brassica oleracea Bo2g144970 I 0.884
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.794
Bra025299 Brassica rapa Bra025299 I 0.771
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.810
Cagra.8966s0002 Capsella grandiflora Cagra.8966s0002 N 0.663
Carubv10007482m.g Capsella rubella Carubv10007482m.g N 0.663
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.810
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.669
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.689
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.697
Cla010586 Citrullus lanatus Cla010586 I 0.683
Eucgr.B00300 Eucalyptus grandis Eucgr.B00300 I 0.663
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.669
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I 0.685
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.686
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.686
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.749
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.666
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.675
MYB118 Arabidopsis thaliana AT3G27785 D 0.807
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.663
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.807
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.669
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.697
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.669
Pm015681 Prunus mume Pm015681 I 0.671
Pm024743 Prunus mume Pm024743 I 0.669
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.671
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.669
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.679
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.669
TCM_016909 Theobroma cacao TCM_016909 I 0.737
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.784
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I 0.665