TCM_016901 (Theobroma cacao)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 TCM_016901 T280520_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.887 0.968
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.860 0.946
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.819 0.871
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.819 0.871
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.819 0.871
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.732 0.796
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.732 0.796
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.716 0.785
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.716 0.785
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.672 0.634
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.672 0.634
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.670 0.796
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY02421 Myb 15 62
EOY02421 Myb 68 113

Links

Other Myb/SANT family TFs
Other Theobroma cacao TFs

493 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30054.m000786 Ricinus communis 30054.m000786 I
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I
APRR2 Arabidopsis thaliana AT4G18020 D
APRR2 Vitis vinifera VIT_02s0012g00570 I
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I
Bo1g019180 Brassica oleracea Bo1g019180 I
Bo7g067200 Brassica oleracea Bo7g067200 I
Bo7g105690 Brassica oleracea Bo7g105690 I
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I
Bra012623 Brassica rapa Bra012623 I
Bra013277 Brassica rapa Bra013277 I
Bra013278 Brassica rapa Bra013278 I
Bra013279 Brassica rapa Bra013279 I
Bra033726 Brassica rapa Bra033726 I
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I
Carubv10004540m.g Capsella rubella Carubv10004540m.g I
Carubv10026528m.g Capsella rubella Carubv10026528m.g I
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I
Ca_02285 Cicer arietinum Ca_02285 I
Ca_12825 Cicer arietinum Ca_12825 I
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I
Cla008926 Citrullus lanatus Cla008926 I
Cla016403 Citrullus lanatus Cla016403 I
Cucsa.313480 Cucumis sativus Cucsa.313480 I
Cucsa.321580 Cucumis sativus Cucsa.321580 I
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I
GLK2 Arabidopsis thaliana AT5G44190 I
GLYMA01G40900 Glycine max GLYMA01G40900 I
GLYMA05G06070 Glycine max GLYMA05G06070 I
GLYMA11G04441 Glycine max GLYMA11G04441 I
GLYMA17G16360 Glycine max GLYMA17G16360 I
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I
Lus10003013.g Linum usitatissimum Lus10003013.g I
Lus10011044.g Linum usitatissimum Lus10011044.g I
Lus10030938.g Linum usitatissimum Lus10030938.g I
Lus10040109.g Linum usitatissimum Lus10040109.g I
MDP0000237396 Malus domestica MDP0000237396 I
MDP0000248863 Malus domestica MDP0000248863 I
MTR_4g098870 Medicago truncatula MTR_4g098870 I
MTR_5g014040 Medicago truncatula MTR_5g014040 I
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I
PGSC0003DMG400021857 Solanum tuberosum PGSC0003DMG400021857 I
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I
PK19826.1 Cannabis sativa PK19826.1 I
Pm014733 Prunus mume Pm014733 I
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I
TCM_015780 Theobroma cacao TCM_015780 I
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I