cassava36364.valid.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava36364.valid.m1 T284231_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.707 0.731
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.705 0.785
GRMZM2G005066
M11056_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$C1_Q2 		0.696 0.720
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.687 0.667
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.687 0.667
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.687 0.731
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.687 0.731
MYB111
M00882_2.00 		Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN		 PBM
Franco-Zorrilla et al.(2014)
MYB111 		0.666 0.731
MYB113
M07026_2.00 		Arabidopsis thaliana
VTAACKRAHTH
DADTYMGTTAB		 Dap-seq
OMalley et al.(2016)
MYB113_col_a 		0.661 0.677
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava36364.valid.m1 Myb 14 61
cassava36364.valid.m1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

881 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N
chr1.LjB17A22.60.nc Lotus japonicus chr1.LjB17A22.60.nc N
chr1.LjB17A22.80.nc Lotus japonicus chr1.LjB17A22.80.nc N
LjSGA_064645.1 Lotus japonicus LjSGA_064645.1 N
LjSGA_070157.1 Lotus japonicus LjSGA_070157.1 N
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N
LjSGA_102731.1 Lotus japonicus LjSGA_102731.1 N