Pavir.J25517 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J25517 T289428_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J25517.1.p Myb 60 107
Pavir.J25517.1.p Myb 113 147

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30068.m002544 Ricinus communis 30068.m002544 I 0.000
Aquca_003_00583 Aquilegia coerulea Aquca_003_00583 I 0.000
Aquca_028_00141 Aquilegia coerulea Aquca_028_00141 I 0.000
Aquca_073_00013 Aquilegia coerulea Aquca_073_00013 I 0.000
ATMYB11 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002710 I 0.000
BGIOSGA003345 Oryza indica BGIOSGA003345 I 0.000
BGIOSGA010900 Oryza indica BGIOSGA010900 I 0.000
Bo3g039690 Brassica oleracea Bo3g039690 I 0.000
Bo4g004500 Brassica oleracea Bo4g004500 I 0.000
Bo7g092680 Brassica oleracea Bo7g092680 I 0.000
Bostr.13158s0261 Boechera stricta Bostr.13158s0261 I 0.000
Bostr.15774s0064 Boechera stricta Bostr.15774s0064 I 0.000
Bostr.25993s0011 Boechera stricta Bostr.25993s0011 I 0.000
Bra000453 Brassica rapa Bra000453 I 0.000
Bra036145 Brassica rapa Bra036145 I 0.000
Bra037419 Brassica rapa Bra037419 I 0.000
BRADI1G64687 Brachypodium distachyon BRADI1G64687 I 0.000
BRADI2G11676 Brachypodium distachyon BRADI2G11676 I 0.000
Cagra.13170s0007 Capsella grandiflora Cagra.13170s0007 I 0.000
Cagra.6296s0007 Capsella grandiflora Cagra.6296s0007 I 0.000
Cagra.9781s0007 Capsella grandiflora Cagra.9781s0007 I 0.000
Carubv10012451m.g Capsella rubella Carubv10012451m.g I 0.000
Carubv10019345m.g Capsella rubella Carubv10019345m.g I 0.000
Carubv10024801m.g Capsella rubella Carubv10024801m.g I 0.000
Carubv10026694m.g Capsella rubella Carubv10026694m.g I 0.000
cassava24756.valid.m1 Manihot esculenta cassava24756.valid.m1 I 0.000
cassava28702.m1 Manihot esculenta cassava28702.m1 I 0.000
cassava29110.valid.m1 Manihot esculenta cassava29110.valid.m1 I 0.000
cassava34176.m1 Manihot esculenta cassava34176.m1 I 0.000
cassava40469.m1 Manihot esculenta cassava40469.m1 I 0.000
cassava7672.valid.m1 Manihot esculenta cassava7672.valid.m1 I 0.000
Ca_03498 Cicer arietinum Ca_03498 I 0.000
chr5.CM0239.580.nc Lotus japonicus chr5.CM0239.580.nc I 0.000
Ciclev10005376m.g Citrus clementina Ciclev10005376m.g I 0.000
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.000
Ciclev10023756m.g Citrus clementina Ciclev10023756m.g I 0.000
Cla009418 Citrullus lanatus Cla009418 I 0.000
Cla017646 Citrullus lanatus Cla017646 I 0.000
Cla022107 Citrullus lanatus Cla022107 I 0.000
Cucsa.069500 Cucumis sativus Cucsa.069500 I 0.000
Cucsa.252700 Cucumis sativus Cucsa.252700 I 0.000
Eucgr.A00200 Eucalyptus grandis Eucgr.A00200 I 0.000
Eucgr.C00721 Eucalyptus grandis Eucgr.C00721 I 0.000
Eucgr.C00724 Eucalyptus grandis Eucgr.C00724 I 0.000
Eucgr.C00826 Eucalyptus grandis Eucgr.C00826 I 0.000
Eucgr.C03151 Eucalyptus grandis Eucgr.C03151 I 0.000
Eucgr.C03555 Eucalyptus grandis Eucgr.C03555 I 0.000
Eucgr.G01774 Eucalyptus grandis Eucgr.G01774 I 0.000
Eucgr.G02195 Eucalyptus grandis Eucgr.G02195 I 0.000
Eucgr.H01058 Eucalyptus grandis Eucgr.H01058 I 0.000
evm.TU.supercontig_18.11 Carica papaya evm.TU.supercontig_18.11 I 0.000
evm.TU.supercontig_9.95 Carica papaya evm.TU.supercontig_9.95 I 0.000
evm.TU.supercontig_96.57 Carica papaya evm.TU.supercontig_96.57 I 0.000
F775_11235 Aegilops tauschii F775_11235 I 0.000
F775_18434 Aegilops tauschii F775_18434 I 0.000
F775_21522 Aegilops tauschii F775_21522 I 0.000
gene02324-v1.0-hybrid Fragaria vesca gene02324-v1.0-hybrid I 0.000
gene05167-v1.0-hybrid Fragaria vesca gene05167-v1.0-hybrid I 0.000
GLYMA02G01740 Glycine max GLYMA02G01740 I 0.000
GLYMA03G37640 Glycine max GLYMA03G37640 I 0.000
GLYMA07G37142 Glycine max GLYMA07G37142 I 0.000
GLYMA09G04370 Glycine max GLYMA09G04370 I 0.000
GLYMA10G01801 Glycine max GLYMA10G01801 I 0.000
GLYMA10G35050 Glycine max GLYMA10G35050 I 0.000
GLYMA15G15400 Glycine max GLYMA15G15400 I 0.000
GLYMA17G03480 Glycine max GLYMA17G03480 I 0.000
GLYMA19G40250 Glycine max GLYMA19G40250 I 0.000
Gorai.001G143200 Gossypium raimondii Gorai.001G143200 I 0.000
Gorai.004G130900 Gossypium raimondii Gorai.004G130900 I 0.000
Gorai.004G151000 Gossypium raimondii Gorai.004G151000 I 0.000
Gorai.007G124000 Gossypium raimondii Gorai.007G124000 I 0.000
Gorai.008G141000 Gossypium raimondii Gorai.008G141000 I 0.000
Gorai.011G195100 Gossypium raimondii Gorai.011G195100 I 0.000
GRMZM2G022686 Zea mays GRMZM2G022686 I 0.000
GRMZM2G051256 Zea mays GRMZM2G051256 I 0.000
GRMZM2G051528 Zea mays GRMZM2G051528 I 0.000
GRMZM2G057027 Zea mays GRMZM2G057027 I 0.000
GRMZM2G084799 Zea mays GRMZM2G084799 I 0.000
GRMZM2G160838 Zea mays GRMZM2G160838 I 0.000
GSMUA_Achr5G21250_001 Musa acuminata GSMUA_Achr5G21250_001 I 0.000
GSMUA_Achr8G10470_001 Musa acuminata GSMUA_Achr8G10470_001 I 0.000
GSMUA_AchrUn_randomG12700_001 Musa acuminata GSMUA_AchrUn_randomG12700_001 I 0.000
HOS10 Arabidopsis lyrata fgenesh2_kg.1__3635__AT1G35515.1 I 0.000
LPERR03G12690 Leersia perrieri LPERR03G12690 I 0.000
Lus10001458.g Linum usitatissimum Lus10001458.g I 0.000
Lus10002435.g Linum usitatissimum Lus10002435.g I 0.000
Lus10010273.g Linum usitatissimum Lus10010273.g I 0.000
Lus10016855.g Linum usitatissimum Lus10016855.g I 0.000
Lus10027459.g Linum usitatissimum Lus10027459.g I 0.000
Lus10036336.g Linum usitatissimum Lus10036336.g I 0.000
Lus10039214.g Linum usitatissimum Lus10039214.g I 0.000
MDP0000031172 Malus domestica MDP0000031172 I 0.000
MDP0000119725 Malus domestica MDP0000119725 I 0.000
MDP0000157940 Malus domestica MDP0000157940 I 0.000
MDP0000210851 Malus domestica MDP0000210851 I 0.000
MDP0000607330 Malus domestica MDP0000607330 I 0.000
mgf003233m Mimulus guttatus mgf003233m I 0.000
mgf012733m Mimulus guttatus mgf012733m I 0.000
mgf024278m Mimulus guttatus mgf024278m I 0.000
MLOC_57220 Hordeum vulgare MLOC_57220 I 0.000
MTR_2g034790 Medicago truncatula MTR_2g034790 I 0.000
MTR_4g121460 Medicago truncatula MTR_4g121460 I 0.000
MTR_7g109320 Medicago truncatula MTR_7g109320 I 0.000
MYB11 Arabidopsis thaliana AT3G62610 I 0.000
MYB111 Arabidopsis thaliana AT5G49330 D 0.000
MYB111 Arabidopsis lyrata scaffold_801313.1 I 0.000
MYB12 Arabidopsis thaliana AT2G47460 I 0.000
MYB12 Arabidopsis lyrata fgenesh2_kg.4__2983__AT2G47460.1 I 0.000
MYB8 Arabidopsis thaliana AT1G35515 I 0.000
OB01G22640 Oryza brachyantha OB01G22640 I 0.000
OB03G24320 Oryza brachyantha OB03G24320 I 0.000
OB06G16110 Oryza brachyantha OB06G16110 I 0.000
OBART01G11800 Oryza barthii OBART01G11800 I 0.000
OBART03G14380 Oryza barthii OBART03G14380 I 0.000
OGLUM01G14390 Oryza glumaepatula OGLUM01G14390 I 0.000
OGLUM03G14490 Oryza glumaepatula OGLUM03G14490 I 0.000
OMERI03G13130 Oryza meridionalis OMERI03G13130 I 0.000
ONIVA01G15380 Oryza nivara ONIVA01G15380 I 0.000
ONIVA03G15280 Oryza nivara ONIVA03G15280 I 0.000
OPUNC03G13890 Oryza punctata OPUNC03G13890 I 0.000
orange1.1g014829m.g Citrus sinensis orange1.1g014829m.g I 0.000
orange1.1g041081m.g Citrus sinensis orange1.1g041081m.g I 0.000
orange1.1g046093m.g Citrus sinensis orange1.1g046093m.g I 0.000
ORGLA01G0099200 Oryza glaberrima ORGLA01G0099200 I 0.000
ORGLA03G0138900 Oryza glaberrima ORGLA03G0138900 I 0.000
ORUFI01G13920 Oryza rufipogon ORUFI01G13920 I 0.000
ORUFI03G15030 Oryza rufipogon ORUFI03G15030 I 0.000
OS01G0305900 Oryza sativa OS01G0305900 I 0.000
Pavir.Ca00231 Panicum virgatum Pavir.Ca00231 I 0.000
Pavir.Db02046 Panicum virgatum Pavir.Db02046 I 0.000
Pavir.Ib01420 Panicum virgatum Pavir.Ib01420 I 0.000
Pavir.J00442 Panicum virgatum Pavir.J00442 I 0.000
Pavir.J00444 Panicum virgatum Pavir.J00444 I 0.000
PDK_20s1388491g004 Phoenix dactylifera PDK_20s1388491g004 I 0.000
PDK_20s1716541g001 Phoenix dactylifera PDK_20s1716541g001 I 0.000
PDK_20s1918041g001 Phoenix dactylifera PDK_20s1918041g001 I 0.000
PGSC0003DMG400004371 Solanum tuberosum PGSC0003DMG400004371 I 0.000
PGSC0003DMG400007304 Solanum tuberosum PGSC0003DMG400007304 I 0.000
PGSC0003DMG400009033 Solanum tuberosum PGSC0003DMG400009033 I 0.000
PGSC0003DMG401023433 Solanum tuberosum PGSC0003DMG401023433 I 0.000
PK06182.1 Cannabis sativa PK06182.1 D 0.000
PK16958.1 Cannabis sativa PK16958.1 I 0.000
Pm005570 Prunus mume Pm005570 I 0.000
Pm008294 Prunus mume Pm008294 I 0.000
Pm020104 Prunus mume Pm020104 I 0.000
POPTR_0001s11100 Populus trichocarpa POPTR_0001s11100 I 0.000
POPTR_0002s19920 Populus trichocarpa POPTR_0002s19920 I 0.000
POPTR_0003s14420 Populus trichocarpa POPTR_0003s14420 I 0.000
POPTR_0006s23840 Populus trichocarpa POPTR_0006s23840 I 0.000
POPTR_0010s15090 Populus trichocarpa POPTR_0010s15090 I 0.000
POPTR_0014s11780 Populus trichocarpa POPTR_0014s11780 I 0.000
POPTR_0018s05530 Populus trichocarpa POPTR_0018s05530 I 0.000
PRUPE_ppa004560mg Prunus persica PRUPE_ppa004560mg I 0.000
PRUPE_ppa007594mg Prunus persica PRUPE_ppa007594mg I 0.000
PRUPE_ppa022205mg Prunus persica PRUPE_ppa022205mg I 0.000
SapurV1A.0035s0030 Salix purpurea SapurV1A.0035s0030 I 0.000
SapurV1A.0050s0720 Salix purpurea SapurV1A.0050s0720 I 0.000
SapurV1A.0059s0150 Salix purpurea SapurV1A.0059s0150 I 0.000
SapurV1A.0158s0390 Salix purpurea SapurV1A.0158s0390 I 0.000
SapurV1A.0180s0510 Salix purpurea SapurV1A.0180s0510 I 0.000
SapurV1A.0710s0070 Salix purpurea SapurV1A.0710s0070 I 0.000
Sb01g037670 Sorghum bicolor Sb01g037670 I 0.000
Sb03g012550 Sorghum bicolor Sb03g012550 I 0.000
SELMODRAFT_120788 Selaginella moellendorffii SELMODRAFT_120788 I 0.000
SELMODRAFT_450007 Selaginella moellendorffii SELMODRAFT_450007 I 0.000
Si002107m.g Setaria italica Si002107m.g I 0.000
Si039538m.g Setaria italica Si039538m.g I 0.000
Solyc01g079620.2 Solanum lycopersicum Solyc01g079620.2 I 0.000
Solyc12g049350.1 Solanum lycopersicum Solyc12g049350.1 I 0.000
TCM_004509 Theobroma cacao TCM_004509 I 0.000
TCM_004777 Theobroma cacao TCM_004777 I 0.000
TCM_010778 Theobroma cacao TCM_010778 I 0.000
TCM_011660 Theobroma cacao TCM_011660 I 0.000
TCM_021317 Theobroma cacao TCM_021317 I 0.000
TCM_021318 Theobroma cacao TCM_021318 I 0.000
TCM_037376 Theobroma cacao TCM_037376 I 0.000
TCM_037555 Theobroma cacao TCM_037555 I 0.000
Thhalv10001498m.g Eutrema salsugineum Thhalv10001498m.g I 0.000
Thhalv10004518m.g Eutrema salsugineum Thhalv10004518m.g I 0.000
Thhalv10006080m.g Eutrema salsugineum Thhalv10006080m.g I 0.000
Traes_1DS_711044AD5 Triticum aestivum Traes_1DS_711044AD5 I 0.000
Traes_4AS_3883DC244 Triticum aestivum Traes_4AS_3883DC244 I 0.000
Traes_4DL_967152326 Triticum aestivum Traes_4DL_967152326 I 0.000
TRIUR3_05136 Triticum urartu TRIUR3_05136 I 0.000
TRIUR3_31689 Triticum urartu TRIUR3_31689 I 0.000
VIT_04s0008g01800 Vitis vinifera VIT_04s0008g01800 I 0.000
VIT_05s0077g01360 Vitis vinifera VIT_05s0077g01360 I 0.000
VIT_07s0005g01210 Vitis vinifera VIT_07s0005g01210 I 0.000