Carubv10009087m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10009087m.g T297485_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC073
M07221_2.00 		Arabidopsis thaliana
CTTSWNNNWYAMGYH
DRCKTRWNNNWSAAG		 Dap-seq
OMalley et al.(2016)
SND2_col_a 		0.933 0.609
NAC073
M07222_2.00 		Arabidopsis thaliana
CKTSWNNNWYACGYW
WRCGTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND2_colamp_a 		0.933 0.609
anac075
M07223_2.00 		Arabidopsis thaliana
CTTSWNNNWYAMGYT
ARCKTRWNNNWSAAG		 Dap-seq
OMalley et al.(2016)
ANAC075_col_a 		0.930 0.582
NAC010
M07167_2.00 		Arabidopsis thaliana
NWWNCTTSWNNNWYAMGHHWYH
DRWDDCKTRWNNNWSAAGNWWN		 Dap-seq
OMalley et al.(2016)
SND3_colamp_a 		0.929 0.564
NAC010
M07168_2.00 		Arabidopsis thaliana
CKTSWNNNWYAMGYW
WRCKTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND3_col_b 		0.929 0.564
PK27085.1
M01293_2.00 		Cannabis sativa
AATTTATT
AATAAATT		 PBM
Lambert et al.(2019)
pTH11262 		0.929 0.582
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009087m NAC/NAM 59 192

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

286 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000388601 Angiostrongylus cantonensis ACAC_0000388601 N
ASIM_0000109601 Anisakis simplex ASIM_0000109601 N
BXY_0973100 Bursaphelenchus xylophilus BXY_0973100 I
BXY_1598800 Bursaphelenchus xylophilus BXY_1598800 N
CBG04789 Caenorhabditis briggsae CBG04789 I
CBG17366 Caenorhabditis briggsae CBG17366 N
CBN03149 Caenorhabditis brenneri CBN03149 N
CBN18264 Caenorhabditis brenneri CBN18264 I
CRE09011 Caenorhabditis remanei CRE09011 I
CRE27175 Caenorhabditis remanei CRE27175 N
EVEC_0001095701 Enterobius vermicularis EVEC_0001095701 I
GPLIN_000628500 Globodera pallida GPLIN_000628500 N
GPLIN_000805100 Globodera pallida GPLIN_000805100 N
GPLIN_000989800 Globodera pallida GPLIN_000989800 N
L596_g24910 Steinernema carpocapsae L596_g24910 N
L596_g9106 Steinernema carpocapsae L596_g9106 I
L889_g10781 Steinernema feltiae L889_g10781 I
L889_g16048 Steinernema feltiae L889_g16048 N
L889_g17146 Steinernema feltiae L889_g17146 I
L892_g10708 Steinernema scapterisci L892_g10708 I
L892_g8144 Steinernema scapterisci L892_g8144 I
L892_g8146 Steinernema scapterisci L892_g8146 N
L893_g2090 Steinernema glaseri L893_g2090 I
L893_g3450 Steinernema glaseri L893_g3450 N
L898_g9580 Steinernema monticolum L898_g9580 I
nhr-205 Caenorhabditis elegans WBGene00011002 N
nhr-33 Caenorhabditis elegans WBGene00013976 N
nhr-53 Caenorhabditis elegans WBGene00003643 I
PEQ_0000882601 Parascaris equorum PEQ_0000882601 N
PPA29361 Pristionchus pacificus PPA29361 I
scaffold28-EXSNAP2012.86 Pristionchus exspectatus scaffold28-EXSNAP2012.86 N
SMUV_0000231601 Syphacia muris SMUV_0000231601 N
SMUV_0000909301 Syphacia muris SMUV_0000909301 I
TCNE_0001892601 Toxocara canis TCNE_0001892601 N