L889_g17247 (Steinernema feltiae)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 L889_g17247 T309063_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-49
M02413_2.00 		Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN		 PBM
Weirauch et al.(2014)
pTH5891 		0.990 0.829
nhr-1
M00686_2.00 		Caenorhabditis elegans
ARTGATCA
TGATCAYT		 PBM
Narasimhan et al.(2015)
pTH9322 		0.945 0.614
Hnf4
M03935_2.00 		Drosophila melanogaster
RGGKCAAAGGTCA
TGACCTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_1 		0.824 0.557
Hnf4
M03936_2.00 		Drosophila melanogaster
RGGKCAAAGTYCA
TGRACTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_2 		0.824 0.557
Hnf4
M03937_2.00 		Drosophila melanogaster
RGTVCAAAGKTCR
YGAMCTTTGBACY		 SELEX
Nitta et al.(2015)
Hnf4_3 		0.824 0.557
Hnf4
M03938_2.00 		Drosophila melanogaster
RTGRACTTTGGACY
RGTCCAAAGTYCAY		 SELEX
Nitta et al.(2015)
Hnf4_4 		0.824 0.557
Hnf4
M06428_2.00 		Drosophila melanogaster
DKNKWSSNGGGGTCA
TGACCCCNSSWMNMH		 B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914 		0.824 0.557
Hnf4
M06429_2.00 		Drosophila melanogaster
GGGGTCAH
DTGACCCC		 B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914 		0.824 0.557
Hnf4a
M00182_2.00 		Mus musculus
NNRGKYMRNN
NNYKRMCYNN		 PBM
Badis et al.(2009)
Hnf4a_2640 		0.819 0.543
HNF4A
M03357_2.00 		Homo sapiens
RWTGRACTTTGSACYB
VRGTSCAAAGTYCAWY		 SELEX
Jolma et al.(2013)
HNF4A_1 		0.819 0.543
HNF4A
M03358_2.00 		Homo sapiens
RRGGKCAAAGTCCRBN
NVYGGACTTTGMCCYY		 SELEX
Jolma et al.(2013)
HNF4A_2 		0.819 0.543
HNF4A
M03359_2.00 		Homo sapiens
NDTGGACTTTGDACYB
VRGTHCAAAGTCCAHN		 SELEX
Jolma et al.(2013)
HNF4A_3 		0.819 0.543
HNF4A
M03360_2.00 		Homo sapiens
RRGGTCAAAGKTCA
TGAMCTTTGACCYY		 SELEX
Jolma et al.(2013)
HNF4A_4 		0.819 0.543
HNF4A
M03361_2.00 		Homo sapiens
VRGGTCAAAGTCCANN
NNTGGACTTTGACCYB		 SELEX
Jolma et al.(2013)
HNF4A_5 		0.819 0.543
HNF4A
M03362_2.00 		Homo sapiens
RRGTYCAAAGKTCAH
DTGAMCTTTGRACYY		 SELEX
Jolma et al.(2013)
HNF4A_6 		0.819 0.543
Hnf4a
M03426_2.00 		Mus musculus
RRGGTCAAAGTCCANN
NNTGGACTTTGACCYY		 SELEX
Jolma et al.(2013)
Hnf4a_1 		0.819 0.543
HNF4A
M05573_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_1 		0.819 0.543
HNF4A
M05574_2.00 		Homo sapiens
RRGGTCAAAGTCCAH
DTGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_2 		0.819 0.543
HNF4A
M05575_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_3 		0.819 0.543
HNF4A
M05576_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_4 		0.819 0.543
HNF4A
M08219_2.00 		Homo sapiens
VRGDBCAAAGKYCAN
NTGRMCTTTGVHCYB		 ChIP-seq
Contrino et al.(2012)
Mv81 		0.819 0.543
HNF4A
M08220_2.00 		Homo sapiens
AGTCCA
TGGACT		 ChIP-seq
Contrino et al.(2012)
Mv82 		0.819 0.543
HNF4A
M09268_2.00 		Homo sapiens
VRGKNCAAAGTYCA
TGRACTTTGNMCYB		 Misc
Kulakovskiy et al.(2013)
HNF4A_HUMAN.H11MO.0.A 		0.819 0.543
Hnf4a
M09308_2.00 		Mus musculus
NRGKBCAAAGTYCA
TGRACTTTGVMCYN		 Misc
Kulakovskiy et al.(2013)
HNF4A_MOUSE.H11MO.0.A 		0.819 0.543
HNF4A
M09605_2.00 		Homo sapiens
NNVRGDNCAAAGKYCA
TGRMCTTTGNHCYBNN		 Misc
Heinz et al.(2010)
HepG2-HNF4a_GSE25021 		0.819 0.543
HNF4A
M11105_2.00 		Homo sapiens
VRGGNCAAAGKYCRB
VYGRMCTTTGNCCYB		 Transfac
Matys et al.(2006)
V$HNF4_01_B 		0.819 0.543
HNF4A
M11106_2.00 		Homo sapiens
NNNRGDBYAAAGKBCANND
HNNTGVMCTTTRVHCYNNN		 Transfac
Matys et al.(2006)
V$HNF4_01 		0.819 0.543
HNF4A
M11107_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_09 		0.819 0.543
HNF4A
M11108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_10 		0.819 0.543
HNF4A
M11109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4ALPHA_Q6 		0.819 0.543
HNF4A
M11110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q3 		0.819 0.543
HNF4A
M11111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q6_01 		0.819 0.543
HNF4A
M11112_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_01 		0.819 0.543
HNF4A
M11113_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_02 		0.819 0.543
HNF4A
M11114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_03 		0.819 0.543
HNF4A
M11115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_04 		0.819 0.543
HNF4A
M05577_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_1 		0.819 0.543
HNF4A
M05578_2.00 		Homo sapiens
RRGGTCAAAGTCCRN
NYGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_2 		0.819 0.543
HNF4A
M05579_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_3 		0.819 0.543
HNF4A
M05580_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_4 		0.819 0.543
HNF4G
M08155_2.00 		Homo sapiens
NVRGDNCAAAGKYCA
TGRMCTTTGNHCYBN		 ChIP-seq
Mathelier et al.(2014)
MA0484.1 		0.816 0.543
HNF4G
M09287_2.00 		Homo sapiens
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_HUMAN.H11MO.0.B 		0.816 0.543
Hnf4g
M09307_2.00 		Mus musculus
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_MOUSE.H11MO.0.C 		0.816 0.543
HNF4G
M11155_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_01 		0.816 0.543
HNF4G
M11156_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_02 		0.816 0.543
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L889_g17247.t1 Nuclear receptor 11 80
L889_g17247.t2 Nuclear receptor 9 78

Links

Other Nuclear receptor family TFs
Other Steinernema feltiae TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27524.m000293 Ricinus communis 27524.m000293 N
AC234149.1_FG002 Zea mays AC234149.1_FG002 N
AMTR_s00079p00088960 Amborella trichopoda AMTR_s00079p00088960 N
Aquca_026_00293 Aquilegia coerulea Aquca_026_00293 N
BGIOSGA001546 Oryza indica BGIOSGA001546 N
BGIOSGA002703 Oryza indica BGIOSGA002703 N
Bo1g156310 Brassica oleracea Bo1g156310 N
Bo2g055410 Brassica oleracea Bo2g055410 N
Bo3g055690 Brassica oleracea Bo3g055690 N
Bo6g106960 Brassica oleracea Bo6g106960 N
Bostr.1460s0172 Boechera stricta Bostr.1460s0172 N
Bostr.26959s0040 Boechera stricta Bostr.26959s0040 N
Bostr.26959s0198 Boechera stricta Bostr.26959s0198 N
Bostr.2902s0344 Boechera stricta Bostr.2902s0344 N
Bra004315 Brassica rapa Bra004315 N
Bra021433 Brassica rapa Bra021433 N
BRADI4G16740 Brachypodium distachyon BRADI4G16740 N
BRADI4G16750 Brachypodium distachyon BRADI4G16750 N
Cagra.1194s0049 Capsella grandiflora Cagra.1194s0049 N
Cagra.3364s0006 Capsella grandiflora Cagra.3364s0006 N
Cagra.6164s0006 Capsella grandiflora Cagra.6164s0006 N
Cagra.6845s0054 Capsella grandiflora Cagra.6845s0054 N
Carubv10000015m.g Capsella rubella Carubv10000015m.g N
Carubv10002654m.g Capsella rubella Carubv10002654m.g N
Carubv10015363m.g Capsella rubella Carubv10015363m.g N
Carubv10021721m.g Capsella rubella Carubv10021721m.g N
Carubv10022391m.g Capsella rubella Carubv10022391m.g N
cassava38982.m1 Manihot esculenta cassava38982.m1 N
cassava43296.valid.m1 Manihot esculenta cassava43296.valid.m1 N
cassava60.valid.m1 Manihot esculenta cassava60.valid.m1 N
cassava6185.valid.m1 Manihot esculenta cassava6185.valid.m1 N
Ca_22996 Cicer arietinum Ca_22996 N
chr1.LjT23D08.90.nc Lotus japonicus chr1.LjT23D08.90.nc N
Ciclev10013705m.g Citrus clementina Ciclev10013705m.g N
Ciclev10016422m.g Citrus clementina Ciclev10016422m.g N
Ciclev10022068m.g Citrus clementina Ciclev10022068m.g N
Ciclev10026374m.g Citrus clementina Ciclev10026374m.g N
Cla007208 Citrullus lanatus Cla007208 N
Cla019264 Citrullus lanatus Cla019264 N
Cla020705 Citrullus lanatus Cla020705 N
Cucsa.031350 Cucumis sativus Cucsa.031350 N
Cucsa.199060 Cucumis sativus Cucsa.199060 N
Cucsa.283560 Cucumis sativus Cucsa.283560 N
Eucgr.B03016 Eucalyptus grandis Eucgr.B03016 N
Eucgr.F02492 Eucalyptus grandis Eucgr.F02492 N
Eucgr.G02321 Eucalyptus grandis Eucgr.G02321 N
Eucgr.J01501 Eucalyptus grandis Eucgr.J01501 N
Eucgr.K02222 Eucalyptus grandis Eucgr.K02222 N
evm.TU.supercontig_1.42 Carica papaya evm.TU.supercontig_1.42 N
evm.TU.supercontig_282.15 Carica papaya evm.TU.supercontig_282.15 N
evm.TU.supercontig_3.514 Carica papaya evm.TU.supercontig_3.514 N
gene03741-v1.0-hybrid Fragaria vesca gene03741-v1.0-hybrid N
gene10300-v1.0-hybrid Fragaria vesca gene10300-v1.0-hybrid N
GLYMA08G31143 Glycine max GLYMA08G31143 N
GLYMA08G48040 Glycine max GLYMA08G48040 N
GLYMA13G07590 Glycine max GLYMA13G07590 N
GLYMA18G53440 Glycine max GLYMA18G53440 N
GLYMA19G06280 Glycine max GLYMA19G06280 N
GLYMA20G24950 Glycine max GLYMA20G24950 N
Gorai.002G217800 Gossypium raimondii Gorai.002G217800 N
Gorai.005G190300 Gossypium raimondii Gorai.005G190300 N
Gorai.006G061200 Gossypium raimondii Gorai.006G061200 N
Gorai.008G056000 Gossypium raimondii Gorai.008G056000 N
GRMZM2G060544 Zea mays GRMZM2G060544 N
GRMZM2G073044 Zea mays GRMZM2G073044 N
GRMZM2G132693 Zea mays GRMZM2G132693 N
GRMZM2G386674 Zea mays GRMZM2G386674 N
GSMUA_Achr1G20970_001 Musa acuminata GSMUA_Achr1G20970_001 N
GSMUA_Achr2G14600_001 Musa acuminata GSMUA_Achr2G14600_001 N
GSMUA_Achr2G22720_001 Musa acuminata GSMUA_Achr2G22720_001 N
GSMUA_Achr3G29520_001 Musa acuminata GSMUA_Achr3G29520_001 N
GSMUA_Achr4G03700_001 Musa acuminata GSMUA_Achr4G03700_001 N
GSMUA_Achr4G06820_001 Musa acuminata GSMUA_Achr4G06820_001 N
GSMUA_Achr4G13790_001 Musa acuminata GSMUA_Achr4G13790_001 N
GSMUA_Achr9G00580_001 Musa acuminata GSMUA_Achr9G00580_001 N
GSMUA_Achr9G21360_001 Musa acuminata GSMUA_Achr9G21360_001 N
GSMUA_AchrUn_randomG00460_001 Musa acuminata GSMUA_AchrUn_randomG00460_001 N
LBD40 Arabidopsis lyrata Al_scaffold_0002_1337 N
LBD40 Arabidopsis thaliana AT1G67100 N
LBD41 Arabidopsis thaliana AT3G02550 N
LBD41 Arabidopsis lyrata fgenesh2_kg.3__191__AT3G02550.1 N
LBD42 Arabidopsis thaliana AT1G68510 N
LBD42 Arabidopsis lyrata fgenesh2_kg.2__1100__AT1G68510.1 N
LjSGA_023437.1 Lotus japonicus LjSGA_023437.1 N
LPERR01G01830 Leersia perrieri LPERR01G01830 N
LPERR01G15290 Leersia perrieri LPERR01G15290 N
Lus10028470.g Linum usitatissimum Lus10028470.g N
MDP0000136037 Malus domestica MDP0000136037 N
MDP0000233303 Malus domestica MDP0000233303 N
mgf010898m Mimulus guttatus mgf010898m N
mgf011656m Mimulus guttatus mgf011656m N
mgf017960m Mimulus guttatus mgf017960m N
mgf021653m Mimulus guttatus mgf021653m N
MLOC_58304 Hordeum vulgare MLOC_58304 N
MTR_6g018270 Medicago truncatula MTR_6g018270 N
MTR_6g453130 Medicago truncatula MTR_6g453130 N
MTR_7g007010 Medicago truncatula MTR_7g007010 N
OB01G11830 Oryza brachyantha OB01G11830 N
OBART01G01940 Oryza barthii OBART01G01940 N
OBART01G17510 Oryza barthii OBART01G17510 N
OGLUM01G02100 Oryza glumaepatula OGLUM01G02100 N
OGLUM01G20320 Oryza glumaepatula OGLUM01G20320 N
OLONG_008015 Oryza longistaminata OLONG_008015 N
OMERI01G01380 Oryza meridionalis OMERI01G01380 N
OMERI01G16320 Oryza meridionalis OMERI01G16320 N
ONIVA01G02110 Oryza nivara ONIVA01G02110 N
ONIVA01G19320 Oryza nivara ONIVA01G19320 N
OPUNC01G01670 Oryza punctata OPUNC01G01670 N
OPUNC01G18000 Oryza punctata OPUNC01G18000 N
orange1.1g022591m.g Citrus sinensis orange1.1g022591m.g N
orange1.1g026365m.g Citrus sinensis orange1.1g026365m.g N
orange1.1g038007m.g Citrus sinensis orange1.1g038007m.g N
orange1.1g045357m.g Citrus sinensis orange1.1g045357m.g N
ORGLA01G0016600 Oryza glaberrima ORGLA01G0016600 N
ORUFI01G02010 Oryza rufipogon ORUFI01G02010 N
ORUFI01G19440 Oryza rufipogon ORUFI01G19440 N
OS01G0511000 Oryza sativa OS01G0511000 N
Pavir.Ea00650 Panicum virgatum Pavir.Ea00650 N
Pavir.Ea01295 Panicum virgatum Pavir.Ea01295 N
Pavir.Eb02390 Panicum virgatum Pavir.Eb02390 N
Pavir.J00526 Panicum virgatum Pavir.J00526 N
Pavir.J01483 Panicum virgatum Pavir.J01483 N
Pavir.J11724 Panicum virgatum Pavir.J11724 N
PGSC0003DMG400005719 Solanum tuberosum PGSC0003DMG400005719 N
PGSC0003DMG400012653 Solanum tuberosum PGSC0003DMG400012653 N
PGSC0003DMG400014547 Solanum tuberosum PGSC0003DMG400014547 N
PGSC0003DMG400024936 Solanum tuberosum PGSC0003DMG400024936 N
PK03169.1 Cannabis sativa PK03169.1 N
PK04548.1 Cannabis sativa PK04548.1 N
PK04625.1 Cannabis sativa PK04625.1 N
PK15647.1 Cannabis sativa PK15647.1 N
PK29811.1 Cannabis sativa PK29811.1 N
Pm029059 Prunus mume Pm029059 N
POPTR_0004s09920 Populus trichocarpa POPTR_0004s09920 N
POPTR_0005s15670 Populus trichocarpa POPTR_0005s15670 N
POPTR_0008s11950 Populus trichocarpa POPTR_0008s11950 N
POPTR_0010s13480 Populus trichocarpa POPTR_0010s13480 N
POPTR_0012s05340 Populus trichocarpa POPTR_0012s05340 N
PRUPE_ppa009213mg Prunus persica PRUPE_ppa009213mg N
PRUPE_ppa011233mg Prunus persica PRUPE_ppa011233mg N
SapurV1A.0078s0410 Salix purpurea SapurV1A.0078s0410 N
SapurV1A.0079s0150 Salix purpurea SapurV1A.0079s0150 N
SapurV1A.0315s0090 Salix purpurea SapurV1A.0315s0090 N
SapurV1A.0851s0010 Salix purpurea SapurV1A.0851s0010 N
Sb01g032580 Sorghum bicolor Sb01g032580 N
Sb03g007270 Sorghum bicolor Sb03g007270 N
Sb09g025710 Sorghum bicolor Sb09g025710 N
Sb09g030780 Sorghum bicolor Sb09g030780 N
Si002412m.g Setaria italica Si002412m.g N
Si004887m.g Setaria italica Si004887m.g N
Si022660m.g Setaria italica Si022660m.g N
Solyc02g085910.2 Solanum lycopersicum Solyc02g085910.2 N
Solyc03g119530.2 Solanum lycopersicum Solyc03g119530.2 N
Solyc05g009320.2 Solanum lycopersicum Solyc05g009320.2 N
TCM_009888 Theobroma cacao TCM_009888 N
TCM_012338 Theobroma cacao TCM_012338 N
TCM_019459 Theobroma cacao TCM_019459 N
Thhalv10019048m.g Eutrema salsugineum Thhalv10019048m.g N
Thhalv10019494m.g Eutrema salsugineum Thhalv10019494m.g N
Thhalv10021328m.g Eutrema salsugineum Thhalv10021328m.g N
TRAES3BF008500030CFD_g Triticum aestivum TRAES3BF008500030CFD_g N
TRAES3BF008600030CFD_g Triticum aestivum TRAES3BF008600030CFD_g N
Traes_2AL_450404EA6 Triticum aestivum Traes_2AL_450404EA6 N
Traes_2BL_3A840DB921 Triticum aestivum Traes_2BL_3A840DB921 N
Traes_2DL_9D8B5B436 Triticum aestivum Traes_2DL_9D8B5B436 N
Traes_4BL_D44ACD58E Triticum aestivum Traes_4BL_D44ACD58E N
Traes_4DL_E0847FBC5 Triticum aestivum Traes_4DL_E0847FBC5 N
VIT_01s0011g03530 Vitis vinifera VIT_01s0011g03530 N
VIT_01s0011g03540 Vitis vinifera VIT_01s0011g03540 N
VIT_14s0006g02950 Vitis vinifera VIT_14s0006g02950 N
VIT_17s0000g03720 Vitis vinifera VIT_17s0000g03720 N