MCINX000302 (Melitaea cinxia)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 MCINX000302 T319595_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.777 0.777
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.777 0.777
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.777 0.777
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.777 0.777
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.762 0.762
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.762 0.762
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.762 0.762
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.762 0.762
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.762 0.762
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.762 0.762
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.762 0.762
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.762 0.762
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.762 0.762
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.762 0.762
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.762 0.762
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.762 0.762
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.746 0.746
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.746 0.746
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.746 0.746
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.746 0.746
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.746 0.746
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.746 0.746
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.746 0.746
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.746 0.746
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.746 0.746
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.746 0.746
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.746 0.746
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.746 0.746
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.738 0.738
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.738 0.738
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.738 0.738
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.738 0.738
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.738 0.738
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.738 0.738
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.738 0.738
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.738 0.738
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.738 0.738
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.738 0.738
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.738 0.738
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.738 0.738
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.715 0.715
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MCINX000302-PA Runt 174 303

Links

Other Runt family TFs
Other Melitaea cinxia TFs

392 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28952.m000016 Ricinus communis 28952.m000016 I 0.000
AMTR_s00024p00098860 Amborella trichopoda AMTR_s00024p00098860 I 0.000
Aquca_002_01252 Aquilegia coerulea Aquca_002_01252 I 0.000
AtIDD14 Arabidopsis lyrata fgenesh2_kg.2__1036__AT1G68130.1 I 0.000
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.000
BGIOSGA011151 Oryza indica BGIOSGA011151 I 0.000
Bo2g134790 Brassica oleracea Bo2g134790 I 0.000
Bo3g139880 Brassica oleracea Bo3g139880 I 0.000
Bo5g043540 Brassica oleracea Bo5g043540 I 0.000
Bo6g097320 Brassica oleracea Bo6g097320 I 0.000
Bo6g106560 Brassica oleracea Bo6g106560 I 0.000
Bo9g070370 Brassica oleracea Bo9g070370 I 0.000
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.000
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.000
Bostr.26959s0085 Boechera stricta Bostr.26959s0085 I 0.000
Bra004050 Brassica rapa Bra004050 I 0.000
Bra004283 Brassica rapa Bra004283 I 0.000
Bra010981 Brassica rapa Bra010981 I 0.000
Bra017432 Brassica rapa Bra017432 I 0.000
Bra024771 Brassica rapa Bra024771 I 0.000
Bra024841 Brassica rapa Bra024841 I 0.000
Bra026624 Brassica rapa Bra026624 I 0.000
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.000
Cagra.1111s0006 Capsella grandiflora Cagra.1111s0006 I 0.000
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.000
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.000
Carubv10009424m.g Capsella rubella Carubv10009424m.g I 0.000
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.000
Carubv10020337m.g Capsella rubella Carubv10020337m.g I 0.000
cassava18079.valid.m1 Manihot esculenta cassava18079.valid.m1 I 0.000
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I 0.000
cassava36596.valid.m1 Manihot esculenta cassava36596.valid.m1 I 0.000
Ca_05083 Cicer arietinum Ca_05083 I 0.000
Ca_22171 Cicer arietinum Ca_22171 I 0.000
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I 0.000
Ciclev10015315m.g Citrus clementina Ciclev10015315m.g I 0.000
Ciclev10020125m.g Citrus clementina Ciclev10020125m.g I 0.000
Cla005913 Citrullus lanatus Cla005913 I 0.000
Cla018945 Citrullus lanatus Cla018945 I 0.000
Cucsa.112090 Cucumis sativus Cucsa.112090 I 0.000
Cucsa.122150 Cucumis sativus Cucsa.122150 I 0.000
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.000
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.000
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.000
evm.TU.supercontig_2.118 Carica papaya evm.TU.supercontig_2.118 I 0.000
evm.TU.supercontig_7.131 Carica papaya evm.TU.supercontig_7.131 I 0.000
F775_43255 Aegilops tauschii F775_43255 I 0.000
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I 0.000
gene09325-v1.0-hybrid Fragaria vesca gene09325-v1.0-hybrid I 0.000
GLYMA05G26780 Glycine max GLYMA05G26780 I 0.000
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.000
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.000
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.000
GLYMA08G09760 Glycine max GLYMA08G09760 I 0.000
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.000
Gorai.002G171100 Gossypium raimondii Gorai.002G171100 I 0.000
Gorai.005G134600 Gossypium raimondii Gorai.005G134600 I 0.000
Gorai.005G154300 Gossypium raimondii Gorai.005G154300 I 0.000
Gorai.006G190500 Gossypium raimondii Gorai.006G190500 I 0.000
Gorai.007G002600 Gossypium raimondii Gorai.007G002600 I 0.000
Gorai.008G293000 Gossypium raimondii Gorai.008G293000 I 0.000
Gorai.009G329200 Gossypium raimondii Gorai.009G329200 I 0.000
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.000
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.000
GSMUA_Achr10G29940_001 Musa acuminata GSMUA_Achr10G29940_001 I 0.000
GSMUA_Achr5G23130_001 Musa acuminata GSMUA_Achr5G23130_001 I 0.000
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.000
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I 0.000
IDD14 Arabidopsis thaliana AT1G68130 I 0.000
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.000
Lus10026369.g Linum usitatissimum Lus10026369.g I 0.000
Lus10031314.g Linum usitatissimum Lus10031314.g I 0.000
Lus10031882.g Linum usitatissimum Lus10031882.g I 0.000
mgf008235m Mimulus guttatus mgf008235m I 0.000
OB09G18760 Oryza brachyantha OB09G18760 I 0.000
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.000
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.000
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.000
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.000
orange1.1g014184m.g Citrus sinensis orange1.1g014184m.g I 0.000
orange1.1g037502m.g Citrus sinensis orange1.1g037502m.g I 0.000
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.000
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.000
OS03G0237250 Oryza sativa OS03G0237250 I 0.000
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.000
PGSC0003DMG400026959 Solanum tuberosum PGSC0003DMG400026959 I 0.000
PGSC0003DMG400031049 Solanum tuberosum PGSC0003DMG400031049 I 0.000
PK17145.1 Cannabis sativa PK17145.1 I 0.000
PK25720.1 Cannabis sativa PK25720.1 I 0.000
Pm005926 Prunus mume Pm005926 I 0.000
Pm025274 Prunus mume Pm025274 I 0.000
POPTR_0008s13980 Populus trichocarpa POPTR_0008s13980 I 0.000
POPTR_0010s11160 Populus trichocarpa POPTR_0010s11160 I 0.000
POPTR_0012s03730 Populus trichocarpa POPTR_0012s03730 I 0.000
POPTR_0015s05180 Populus trichocarpa POPTR_0015s05180 I 0.000
PRUPE_ppa004447mg Prunus persica PRUPE_ppa004447mg I 0.000
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I 0.000
SapurV1A.0015s0850 Salix purpurea SapurV1A.0015s0850 I 0.000
SapurV1A.0055s0020 Salix purpurea SapurV1A.0055s0020 I 0.000
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I 0.000
SapurV1A.1169s0070 Salix purpurea SapurV1A.1169s0070 I 0.000
SGR5 Arabidopsis thaliana AT2G01940 D 0.000
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.000
Solyc01g005060.2 Solanum lycopersicum Solyc01g005060.2 I 0.000
Solyc06g072360.2 Solanum lycopersicum Solyc06g072360.2 I 0.000
TCM_011210 Theobroma cacao TCM_011210 I 0.000
TCM_039880 Theobroma cacao TCM_039880 I 0.000
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.000
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.000
Thhalv10018614m.g Eutrema salsugineum Thhalv10018614m.g I 0.000
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.000
VIT_01s0011g06400 Vitis vinifera VIT_01s0011g06400 I 0.000
VIT_17s0000g01870 Vitis vinifera VIT_17s0000g01870 I 0.000